Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11d06
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 31 0.70
04_04_1584 + 34601927-34602144,34603324-34603510,34604239-346044... 31 0.70
03_05_1111 - 30479793-30479823,30479887-30479978,30480261-304804... 31 1.2
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 29 3.7
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 29 3.7
09_02_0302 - 7086017-7086124,7086125-7086796,7087511-7088070,708... 28 8.6
>06_03_0742 + 24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 31.5 bits (68), Expect = 0.70
Identities = 23/88 (26%), Positives = 39/88 (44%)
Frame = -2
Query: 411 RVPKTTKVERMGKYDRIQELCSCENTPYNTGDQIQFQLPKDFHNSDTYTSNLKYTHKGYD 232
R K K E + R +E E+T GD+ + PK+ H ++ T + K H+ D
Sbjct: 951 RPKKDDKAEAKAEDIRPKEGDEAEDTRPKEGDEAEDTRPKEDHEAEDST-HPKEDHEAED 1009
Query: 231 NTCDKRDRKILSVTPTNCPVPVAMEKIL 148
+T K D + + + +EKI+
Sbjct: 1010 STHPKEDHEAEGDDEDQMKLQMEVEKII 1037
>04_04_1584 +
34601927-34602144,34603324-34603510,34604239-34604496,
34604866-34604965,34608523-34608639,34608704-34608804,
34609035-34610141
Length = 695
Score = 31.5 bits (68), Expect = 0.70
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = -2
Query: 642 DDQGKILLDESSLTKKSLPCAHRNLSFIERNQRCPSPTSSILSSKRSYQPIPYSHYQNEV 463
+D G + + ES + KS R+ F R PSP + S+ +S P P+
Sbjct: 446 NDSGSLFIMESVVKPKSTSSGPRSDQFEAFVYRTPSPRRHLSSTCQSLPPPPFV----RD 501
Query: 462 PKYDEIFTKINA 427
PK+ I TKI +
Sbjct: 502 PKFSNIRTKITS 513
>03_05_1111 -
30479793-30479823,30479887-30479978,30480261-30480410,
30482229-30482354,30482563-30482628,30483134-30483214,
30483310-30483422,30483553-30483721,30484253-30484330,
30485489-30485752,30486239-30486379,30486548-30486759,
30486819-30486940,30487281-30487398,30487925-30487997
Length = 611
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -2
Query: 354 LCSCENTPYNTGDQIQFQLPKDFHNSDTYT-SNLKYTHKGYDNTCDKRDRKILSVTPTN 181
+CS T ++ + +L + +HNS + ++L + H Y N +K+ L V PTN
Sbjct: 31 ICSISGT-HSLVNHPNLRLQRGYHNSGKFDLTDLTHPHIWYPNAREKKRNVFLHVGPTN 88
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -2
Query: 507 RSYQPIPYSHYQNEVPKYDEIFTKINANELKIRVPKTTK--VERMGKYDRIQELCSCENT 334
R + P P Q PK +E AN+L P K V+ +G DR+Q S E T
Sbjct: 3760 REFTPYPSVEDQGSAPKAEEPLPPTTANQLGSGSPWKFKYQVDLVGMMDRVQP--SSEAT 3817
Query: 333 P 331
P
Sbjct: 3818 P 3818
>04_04_1263 -
32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 222 RKYCRSLYECILNLKCKYQNYGNLSVTGIVSDLLYCKVY 338
R + + EC N CK Y NLS G ++D C V+
Sbjct: 353 RSFDQCAAECSSNCSCKAYAYANLSSGGTMADPSRCLVW 391
>09_02_0302 - 7086017-7086124,7086125-7086796,7087511-7088070,
7088754-7089131,7089357-7089821,7090022-7090127,
7090219-7090294,7090407-7090648,7090824-7090904,
7091013-7091205,7091336-7091558,7091611-7091646,
7091694-7091790
Length = 1078
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = -2
Query: 444 FTKINANELKIRVPKTTKVERMGKYDRIQE----LCSCENTPYNTGDQIQFQLPKDFHNS 277
F A+ L ++P+ K +R D + + + +C +N I + +HN+
Sbjct: 836 FGTFRADHLSSKIPEQAKADREAFSDTLSKSAAVMATCAALLFNAALNIFLNVQAIYHNN 895
Query: 276 DTYTSN 259
+T T+N
Sbjct: 896 NTSTNN 901
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,578,661
Number of Sequences: 37544
Number of extensions: 338857
Number of successful extensions: 804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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