Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11d06
(724 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 29 0.034
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 29 0.034
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 29 0.034
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 28 0.078
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 27 0.24
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 2.9
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 23 2.9
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 3.9
AF441189-1|AAL73401.1| 134|Apis mellifera ribosomal protein 49 ... 22 5.1
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 22 6.7
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 22 6.7
AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly pro... 21 8.9
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 29.5 bits (63), Expect = 0.034
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 294 KDFHNSDTYTSNLKYTHKGYDNTCDKRDRKILSVTPTNCPVPV 166
K HN++ Y N Y + Y+N C K I + PVPV
Sbjct: 88 KTIHNNNNYKYN--YNNNNYNNNCKKLYYNINYIEQIPIPVPV 128
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 29.5 bits (63), Expect = 0.034
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 294 KDFHNSDTYTSNLKYTHKGYDNTCDKRDRKILSVTPTNCPVPV 166
K HN++ Y N Y + Y+N C K I + PVPV
Sbjct: 88 KTIHNNNNYKYN--YNNNNYNNNCKKLYYNINYIEQIPIPVPV 128
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 29.5 bits (63), Expect = 0.034
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 294 KDFHNSDTYTSNLKYTHKGYDNTCDKRDRKILSVTPTNCPVPV 166
K HN++ Y N Y + Y+N C K I + PVPV
Sbjct: 88 KTIHNNNNYKYN--YNNNNYNNNCKKLYYNINYIEQIPIPVPV 128
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 28.3 bits (60), Expect = 0.078
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 294 KDFHNSDTYTSNLKYTHKGYDNTCDKRDRKILSVTPTNCPVPV 166
+ HN++ Y N Y + Y+N C K I + PVPV
Sbjct: 88 RTIHNNNNYKYN--YNNNNYNNNCKKLYYNINYIEQIPVPVPV 128
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 26.6 bits (56), Expect = 0.24
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 285 HNSDTYTSNLKYTHKGYDNTCDKRDRKILSVTPTNCPVPV 166
+N++ Y +N Y + Y+N C K I+++ PVPV
Sbjct: 333 YNNNNYNNN-NYNNN-YNNNCKKLYYNIINIEQIPVPVPV 370
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.0 bits (47), Expect = 2.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2
Query: 267 TSNLKYTHKGYDNTC 223
T N K + GY NTC
Sbjct: 7 TENAKVSDSGYSNTC 21
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 23.0 bits (47), Expect = 2.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2
Query: 267 TSNLKYTHKGYDNTC 223
T N K + GY NTC
Sbjct: 7 TENAKVSDSGYSNTC 21
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 22.6 bits (46), Expect = 3.9
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -2
Query: 441 TKINANELKI-RVPKTTKVERMGKYDRIQELCSCENTP 331
TK E+ + R P T + R+ K + +QE SC P
Sbjct: 337 TKERTEEVALDRTPVTQGLLRVKKEEELQEAPSCGGGP 374
>AF441189-1|AAL73401.1| 134|Apis mellifera ribosomal protein 49
protein.
Length = 134
Score = 22.2 bits (45), Expect = 5.1
Identities = 7/22 (31%), Positives = 16/22 (72%)
Frame = -3
Query: 581 RIAIFHSLKEIKGVRVQHQAFC 516
R + H++KE++ + +Q++ FC
Sbjct: 74 RKVLVHNVKELEVLMMQNRKFC 95
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.8 bits (44), Expect = 6.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 365 LSYFPIRSTFVVFGTRIFSSFALIFVNIS 451
LS FP RS + +RIF F N++
Sbjct: 405 LSKFPTRSKRIDVISRIFFPIVFAFFNLA 433
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.8 bits (44), Expect = 6.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 365 LSYFPIRSTFVVFGTRIFSSFALIFVNIS 451
LS FP RS + +RIF F N++
Sbjct: 405 LSKFPTRSKRIDVISRIFFPIVFAFFNLA 433
>AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly
protein MRJP5 protein.
Length = 598
Score = 21.4 bits (43), Expect = 8.9
Identities = 9/46 (19%), Positives = 24/46 (52%)
Frame = -2
Query: 471 NEVPKYDEIFTKINANELKIRVPKTTKVERMGKYDRIQELCSCENT 334
+ + + D + T ++ + R K + ++RM + DR+ + + + T
Sbjct: 415 DRIDRIDRMHT-MDTMDTMDRTDKMSSMDRMDRMDRVDRMDTMDRT 459
Score = 21.4 bits (43), Expect = 8.9
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -2
Query: 411 RVPKTTKVERMGKYDRIQEL 352
R K ++++RM K DR+ +
Sbjct: 506 RTDKMSRIDRMDKIDRMDRM 525
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,947
Number of Sequences: 438
Number of extensions: 4674
Number of successful extensions: 19
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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