Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11d03
(860 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 31 0.28
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 30 0.49
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 28 2.0
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.0
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 28 2.0
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos... 27 3.4
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 27 3.4
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 26 6.0
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 26 6.0
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 7.9
SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|ch... 26 7.9
SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.9
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 26 7.9
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|... 26 7.9
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 26 7.9
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 30.7 bits (66), Expect = 0.28
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Frame = +1
Query: 310 FIPGYITNAIGVKIEMSTLF-MSHTTRIGRYLEYD--FVPGWAAIFWYMQTILISISTCH 480
F+ + NA+G L S T I RY++ F GW +WY L++
Sbjct: 85 FVIWTVMNALGEMCTYLPLSGASPITYIERYVDASLAFAAGWN--YWYAYVFLVASEVTA 142
Query: 481 LLFCGSFWTGAVT---WIVWILTRHAIIMIFF 567
+WT AV WI +L A++ FF
Sbjct: 143 ASIVIEYWTYAVPTAGWIAILLFLVAVLNSFF 174
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 29.9 bits (64), Expect = 0.49
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +1
Query: 322 YITNAIGVKIEMSTLFMSHTTRIGRYLE--YDFVPGWAAIFWYMQTILISISTCHLLFCG 495
++ A+G + S T R+++ + F W F Y T ++TC + F
Sbjct: 124 FVIYALGEMAVAYPVAGSFNTYATRFIDPAWGFAVSWNYFFNYFVTFPFELTTCAITF-- 181
Query: 496 SFWTGAVTWIVWI 534
+FWT V VWI
Sbjct: 182 TFWTD-VNCAVWI 193
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 31 HKHFVQSFFYLIFSACFWRTATV*WRYTLSSTSIFNRNIFFSCGHGSYELILKFCLSTRH 210
H H V L+ S CF+ A YT +T++ +R I FS + + + L+ R
Sbjct: 152 HTHIVVRVLLLLLSICFFVGAAF---YTAYTTNVTHRGIGFSLIFSPFAALTRLYLA-RF 207
Query: 211 LN 216
LN
Sbjct: 208 LN 209
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 31 HKHFVQSFFYLIFSACFWRTATV*WRYTLSSTSIFNRNIFFSCGHGSYELILKFCLSTRH 210
H H V L+ S CF+ A YT +T++ +R I FS + + + L+ R
Sbjct: 152 HTHIVVRVLLLLLSICFFVGAAF---YTAYTTNVTHRGIGFSLIFSPFAALTRLYLA-RF 207
Query: 211 LN 216
LN
Sbjct: 208 LN 209
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 622 ATSTGVLSCLKIFSRITRSINDRRISRATEVWWSGSLKSSDDQFPKTGYTKKHY 783
A G+LSCL + ++ + S+ +W + SLK +F G+ HY
Sbjct: 511 ANPIGILSCLDEECVMPKATDATFTSKLDALWRNKSLKYKPFKFADQGFILTHY 564
>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 581
Score = 27.1 bits (57), Expect = 3.4
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = +1
Query: 373 SHTTRIGRYLE--YDFVPGWAAIFWYMQTILISISTCHLLFCGSFWT--GAVTWIVWILT 540
S T R+++ + F W Y T + ++TC + F FWT + WI L
Sbjct: 141 SFNTYATRFIDPAWGFAVSWNYFLNYFVTCPLELTTCAITF--KFWTEINSAAWISIFLA 198
Query: 541 RHAIIMIF 564
+I +F
Sbjct: 199 VVIVINLF 206
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = -3
Query: 519 CYCSGPKTATKQQMAC-RNTDQYCLHVPKDCCPTGNKVIFQ 400
C+ ++ M C R D YC V KD C + K +Q
Sbjct: 120 CWLPDRSHHSRVSMRCIRKFDHYCSFVGKDVCFSNQKFFYQ 160
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 112 TLSSTSIFNRNIFFSCGHGSYELILKFCLSTRHLNRFTNSK 234
TLS +S+ + +C HG +F + RH+NRF K
Sbjct: 201 TLSFSSLRSATSALNCMHGFVYGKTEFHMRYRHMNRFVAFK 241
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +1
Query: 406 YDFVPGWAAIFWYMQTILISISTCHLLFCGSFWT--GAVTWIVWILTRHAIIMIF 564
+ F GW Y T + ++TC + F +WT + WI L I +F
Sbjct: 161 WGFAVGWNYFMNYFVTFPLELTTCAITF--RYWTDINSCAWITIFLVFVICINLF 213
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -3
Query: 564 KDHYNSMPCEDPDDPCYCSGPKTATKQQMACRNTDQYCLHVPKDC 430
K H+ C PD C S K K++M C + Q H C
Sbjct: 709 KTHFCEKLCH-PDGECESSCKKECGKRRMYCEHVCQSPCHAGHPC 752
>SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 129
Score = 25.8 bits (54), Expect = 7.9
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Frame = -3
Query: 435 DCCPTGNKVIFQIPS-DSCG----MGHKQRAHFNFNSDGVGDISRDEPGQLMPTNVEGYP 271
D P G +V+ + D+ G +GH + A +G++ R E G +PT
Sbjct: 36 DAHPGGEEVLVDLAGRDASGPFEDVGHSEDAQELLEKFYIGNLLRTEDGPQLPTTGAAAG 95
Query: 270 GVVYDFPKQV 241
G YD + V
Sbjct: 96 GSGYDSSQPV 105
>SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 107
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 118 SSTSIFNRNIFFSCGHGSYELILKFCLSTRHLNRFTNSKLNHLLW--KIIYYSGIT 279
S+ SI + FF + S+EL++ H+ F+ +++ + W +I+ Y T
Sbjct: 42 STNSICSHYQFFGGHYESFELLVVIVYYFSHVGSFSLAEIYRITWDKRIVLYGTTT 97
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -1
Query: 509 PVQKLPQNNKWHVEILINIVCMYQKIAAQPGTKSYSKYRPILVVWDINN 363
P+ +P N+ HV + +++ A TKSY+ + +L D+N+
Sbjct: 534 PINYVPMNDASHVMTCTKAMNNFKRNATFMRTKSYTFGQSVLASPDVND 582
>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.8 bits (54), Expect = 7.9
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Frame = -3
Query: 807 DGVEAGEIIMFLRISCFGKLIITRFQGAGPPNLSSAGNS--SVVDRSCNPRKDFQTTQDP 634
D + + I+ LR CF ++I+ GA P S G+S + R + R P
Sbjct: 141 DSTKIQQAILELR-KCFSRVIVNVTLGAPLPQQKSLGSSIGHMATRCISCR--------P 191
Query: 633 CACGTANAFKKKGITELAACPEEKDHYNSMPCEDPDD 523
G+A G L+ P +H+ S CE P+D
Sbjct: 192 LTSGSARRIT--GFLRLSRMP---NHFRSGICETPED 223
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 25.8 bits (54), Expect = 7.9
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Frame = +1
Query: 103 WRYTLSSTSIF-NRNIFFSCGHGSYELILKFCLS-TRHLNRFTNSKLNHLLWKIIYYSGI 276
W + L+ + N +C E + LS TR+ +NS L HLL I+ +
Sbjct: 242 WSHGLTPEVFWQNTESILTCPEEQLEQKISLLLSSTRNSPTMSNSSLTHLLPTPIFVGDV 301
Query: 277 T-FHVGWH*LAWFIPGYITNAIGVKIEM 357
T F+ ++F+ + VK E+
Sbjct: 302 TGFYPPPENTSYFVLNLSNTTLNVKNEL 329
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,799,165
Number of Sequences: 5004
Number of extensions: 88770
Number of successful extensions: 251
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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