Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11d03
(860 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989... 29 6.3
02_01_0278 - 1851338-1851412,1851579-1851819,1851946-1852047,185... 29 6.3
11_06_0214 - 21327117-21327521 28 8.3
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270... 28 8.3
05_07_0268 + 28830373-28830435,28830632-28830736,28831055-28831975 28 8.3
05_07_0262 + 28769335-28769391,28769732-28769855,28770175-287702... 28 8.3
04_01_0268 - 3585907-3588086,3590167-3590326 28 8.3
01_05_0782 - 25148733-25149166,25149252-25149415,25149636-251496... 28 8.3
>04_04_1062 -
30498158-30498271,30498358-30498518,30498606-30498924,
30499412-30499477,30499601-30499726,30499821-30499961,
30500482-30500535,30501508-30501636,30501733-30501870,
30501993-30502061,30502135-30502203,30502468-30502623,
30503795-30503895,30503986-30504136,30504475-30504520,
30504539-30504637,30504796-30504928,30505018-30505195,
30505282-30505524,30505612-30505680,30505986-30506085,
30506898-30507007
Length = 923
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/61 (31%), Positives = 24/61 (39%)
Frame = -3
Query: 768 ISCFGKLIITRFQGAGPPNLSSAGNSSVVDRSCNPRKDFQTTQDPCACGTANAFKKKGIT 589
I C G L + R G G LSS+ S + C + T D C F KK +
Sbjct: 403 IDCTGHLQVWRVNGDGKTLLSSSDQSKLYTGDCYIFQYTYTGDDKEECLIGTWFGKKSVE 462
Query: 588 E 586
E
Sbjct: 463 E 463
>02_01_0278 -
1851338-1851412,1851579-1851819,1851946-1852047,
1852291-1852364,1852455-1852592,1852848-1853003,
1853364-1853513,1853808-1853867,1853946-1854073,
1854209-1854617,1855571-1855628,1856435-1856493,
1857478-1857606,1857765-1857774,1858134-1858183,
1858633-1858854
Length = 686
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 407 YSKYRPILVVWDINNVLISILTPMALVIYPGMN 309
+SKY P + +W I + ILT L +PG N
Sbjct: 373 FSKYTPAIDIWSIGCIFAEILTGRPL--FPGRN 403
>11_06_0214 - 21327117-21327521
Length = 134
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 445 MQTILISISTCHLLFCGSF--WTGAVT-WIVWILTRHAIIMIFFFWTCC*FSNT 597
M I +++ST L W GA+ W++ +L AI FF + CC F+ T
Sbjct: 72 MAIIYMAMSTLFFLRIAPLTPWWGALAAWVMILLIVEAIFAFFFPYRCC-FNET 124
>06_03_1067 - 27326167-27326295,27326572-27326656,27326993-27327033,
27327274-27327333,27327843-27327962,27328842-27329114,
27329186-27329257,27329798-27329860,27329957-27330139,
27330544-27330660,27330734-27332683,27332770-27332907,
27333003-27333284,27334650-27335522
Length = 1461
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +1
Query: 151 FSCGHGSYELIL---KFCLSTRHLNRFTNSKLNHLLWKIIYYSGI 276
+S G SY L+L +F HL R N L LL +Y+ GI
Sbjct: 1348 YSGGLSSYCLVLLIVRFLQHEHHLGRPINQNLGSLLMDFLYFFGI 1392
>05_07_0268 + 28830373-28830435,28830632-28830736,28831055-28831975
Length = 362
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -3
Query: 729 GAGPPNLSSAGNSSVVDRSCNPRKDFQTT 643
G G +++AG+ +VV RS NP DF+++
Sbjct: 284 GGGVVGVAAAGSMAVVKRSHNPYADFRSS 312
>05_07_0262 +
28769335-28769391,28769732-28769855,28770175-28770266,
28770673-28771078,28772057-28772184,28772273-28772332,
28772814-28772963,28772999-28773061,28773062-28773217,
28773361-28773572,28773698-28773796,28774343-28774512,
28774592-28775040
Length = 721
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 407 YSKYRPILVVWDINNVLISILTPMALVIYPGMN 309
+SKY P + +W I + +LT L +PG N
Sbjct: 287 FSKYTPAIDIWSIGCIFAEVLTGKPL--FPGKN 317
>04_01_0268 - 3585907-3588086,3590167-3590326
Length = 779
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = +1
Query: 388 IGRYLEYDFVPGWAAIFWYMQTILISISTCHLLFCGSFWTGAVTWIVWILTRHA 549
I L+Y F W I Y S L CG G +T IVWIL HA
Sbjct: 713 ISLMLDYIF-NAWVRILMYASVRCTLDSHAKQLACG----GELTTIVWILNEHA 761
>01_05_0782 -
25148733-25149166,25149252-25149415,25149636-25149664,
25150049-25150109,25150264-25150475,25150587-25150742,
25150837-25150986,25151486-25151545,25151653-25151780,
25152399-25152807,25153087-25153106,25153916-25154048
Length = 651
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 407 YSKYRPILVVWDINNVLISILTPMALVIYPGMN 309
+SKY P + +W I + +LT L +PG N
Sbjct: 248 FSKYTPAIDIWSIGCIFAEVLTGKPL--FPGKN 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,044,883
Number of Sequences: 37544
Number of extensions: 549302
Number of successful extensions: 1468
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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