Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11d03
         (860 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    28   0.32 
AJ496389-1|CAD43035.1|  103|Anopheles gambiae mannosyl glycoprot...    26   1.7  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   6.8  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    23   9.0  
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           23   9.0  

>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 28.3 bits (60), Expect = 0.32
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -1

Query: 416 TKSYSKYRPILVVWDINNVLISILT 342
           TK+ +KYRP+  + ++N VL S++T
Sbjct: 528 TKNPAKYRPLTCLSNLNKVLSSVIT 552


>AJ496389-1|CAD43035.1|  103|Anopheles gambiae mannosyl glycoprotein
           transferase protein.
          Length = 103

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = -1

Query: 530 QTIHVTAPVQKLPQNNKWHVEILINIVCMYQKIAAQPGTKS 408
           Q++      +K    ++W  ++L  +  +YQK+   P   S
Sbjct: 24  QSLQTQVTTEKYASQSQWGYQVLPTLYSIYQKVEVTPWISS 64


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 36   TFCAVVFLSNFFGLFLENSNCVMEVHIEQYEY 131
            TF AV+   N   + + +S C+M++   +Y Y
Sbjct: 1650 TFSAVLDYLNMIFICIFSSECLMKIFALRYHY 1681



 Score = 23.4 bits (48), Expect = 9.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 339  DGVGDISRDEPGQLMPTNVEGYPG 268
            DGV D   +E   L P N +GYPG
Sbjct: 1809 DGVLDGIINEEDCLPPDNDKGYPG 1832


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
 Frame = -3

Query: 633 CACGTANAFKKKGITELAACPEEKDHYNSMP-CEDPDD----PCYCS 508
           C C   N+  ++ + E    P   D   + P C D  +     CYC+
Sbjct: 503 CECNLQNSQNRRELFEQCVAPSVGDELRTGPICSDRGECICGQCYCN 549


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 230  LSLITCFGKSYTTPG*PSTL 289
            +++    G  Y TPG PSTL
Sbjct: 1221 INIYATAGNDYNTPGRPSTL 1240


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 975,515
Number of Sequences: 2352
Number of extensions: 23612
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 91786122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)