Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11d03
         (860 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF107717-1|ABK96969.1|  307|Homo sapiens G protein-coupled recep...    33   1.8  
AY278562-1|AAP35064.1|  963|Homo sapiens G-protein coupled recep...    33   1.8  
AL137846-14|CAI10884.1|  963|Homo sapiens G protein-coupled rece...    33   1.8  
BC035896-1|AAH35896.1|  820|Homo sapiens KIF26B protein protein.       31   4.1  
AY923834-1|AAY17361.1| 2108|Homo sapiens kinesin family member 2...    31   4.1  
AL139247-1|CAI21679.1|   95|Homo sapiens late cornified envelope...    31   7.1  

>EF107717-1|ABK96969.1|  307|Homo sapiens G protein-coupled receptor
           144 protein.
          Length = 307

 Score = 32.7 bits (71), Expect = 1.8
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +2

Query: 278 PSTLVGINWPGSSLDISPTPSELKLK*ARCLCPIPQESDGIWN 406
           PS  +   W   +LD+  TPS L     R LCP+P E    WN
Sbjct: 231 PSEGLLFRWDPGALDV--TPSLLPTVWVRLLCPVPSEECPTWN 271


>AY278562-1|AAP35064.1|  963|Homo sapiens G-protein coupled receptor
           GPR144 protein.
          Length = 963

 Score = 32.7 bits (71), Expect = 1.8
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +2

Query: 278 PSTLVGINWPGSSLDISPTPSELKLK*ARCLCPIPQESDGIWN 406
           PS  +   W   +LD+  TPS L     R LCP+P E    WN
Sbjct: 296 PSEGLLFRWDPGALDV--TPSLLPTVWVRLLCPVPSEECPTWN 336


>AL137846-14|CAI10884.1|  963|Homo sapiens G protein-coupled
           receptor 144 protein.
          Length = 963

 Score = 32.7 bits (71), Expect = 1.8
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +2

Query: 278 PSTLVGINWPGSSLDISPTPSELKLK*ARCLCPIPQESDGIWN 406
           PS  +   W   +LD+  TPS L     R LCP+P E    WN
Sbjct: 296 PSEGLLFRWDPGALDV--TPSLLPTVWVRLLCPVPSEECPTWN 336


>BC035896-1|AAH35896.1|  820|Homo sapiens KIF26B protein protein.
          Length = 820

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 669 NPRKDFQTTQDPCACGTANAFKKKG 595
           +PRK   T  DP  CG  NAF+K+G
Sbjct: 92  DPRKKQITLYDPLTCGGQNAFQKRG 116


>AY923834-1|AAY17361.1| 2108|Homo sapiens kinesin family member 26B
           protein.
          Length = 2108

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 669 NPRKDFQTTQDPCACGTANAFKKKG 595
           +PRK   T  DP  CG  NAF+K+G
Sbjct: 475 DPRKKQITLYDPLTCGGQNAFQKRG 499


>AL139247-1|CAI21679.1|   95|Homo sapiens late cornified envelope 3B
           protein.
          Length = 95

 Score = 30.7 bits (66), Expect = 7.1
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -3

Query: 123 TAQCVPPSHSCCSPK 79
           +AQC+PP+ SCC+P+
Sbjct: 26  SAQCLPPASSCCAPR 40


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,261,764
Number of Sequences: 237096
Number of extensions: 3387894
Number of successful extensions: 14806
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14797
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)