Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11d03
(860 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014296-2950|AAF49312.2| 1660|Drosophila melanogaster CG6052-PA... 37 0.041
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P... 34 0.29
AL138972-4|CAB72287.1| 435|Drosophila melanogaster EG:BACR25B3.... 32 1.2
AE014298-404|AAF45787.2| 4629|Drosophila melanogaster CG33950-PF... 32 1.2
AY113360-1|AAM29365.1| 662|Drosophila melanogaster HL08076p pro... 31 2.0
AY061028-1|AAL28576.1| 721|Drosophila melanogaster HL05638p pro... 31 2.0
AE014296-1482|AAN12010.2| 721|Drosophila melanogaster CG32355-P... 31 2.0
AE014298-1331|AAF46494.1| 4547|Drosophila melanogaster CG12139-P... 31 2.7
AE014134-2707|AAN10938.1| 2282|Drosophila melanogaster CG31817-P... 30 4.7
AY051948-1|AAK93372.1| 382|Drosophila melanogaster LD42063p pro... 29 6.2
AE014298-1163|AAF46360.3| 382|Drosophila melanogaster CG1636-PA... 29 6.2
AE014134-1954|AAF53012.2| 777|Drosophila melanogaster CG31869-P... 29 6.2
AY070707-1|AAL48178.1| 418|Drosophila melanogaster RH60875p pro... 29 8.2
AE014297-4572|AAF57030.1| 418|Drosophila melanogaster CG9733-PA... 29 8.2
>AE014296-2950|AAF49312.2| 1660|Drosophila melanogaster CG6052-PA
protein.
Length = 1660
Score = 36.7 bits (81), Expect = 0.041
Identities = 28/123 (22%), Positives = 51/123 (41%)
Frame = +1
Query: 172 YELILKFCLSTRHLNRFTNSKLNHLLWKIIYYSGITFHVGWH*LAWFIPGYITNAIGVKI 351
+ ++L F + ++ S+ L +I+ G+ H H +AWF+ YI + V +
Sbjct: 212 FVILLSFIYPASTVTKYVTSEKELQLKEIMKLIGV--HNWLHWVAWFVKSYIMLMLVVFL 269
Query: 352 EMSTLFMSHTTRIGRYLEYDFVPGWAAIFWYMQTILISISTCHLLFCGSFWTGAVTWIVW 531
MS + + + +VP + Y+ T + +LF + AV I W
Sbjct: 270 IMSLIMVKFYASVAVLTFSSWVPVLLFLHTYVVTSVCLCFMLAVLFSKASTASAVAAIFW 329
Query: 532 ILT 540
LT
Sbjct: 330 FLT 332
>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
protein.
Length = 23015
Score = 33.9 bits (74), Expect = 0.29
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -3
Query: 678 RSCNPRKDFQTTQDPCACGTANAFKKKGITELAAC-PEEKDHYNSMPCEDPDDPCYCS-- 508
++C P D + T +PC G + ++ G + C PE + S+PCE P +PC S
Sbjct: 8812 KNCIPEGD-ECTPNPC--GPNSGCRRVGGNPVCFCLPEYEGQPPSIPCELPSNPCDPSPC 8868
Query: 507 GPKT 496
GP T
Sbjct: 8869 GPNT 8872
>AL138972-4|CAB72287.1| 435|Drosophila melanogaster EG:BACR25B3.2
protein.
Length = 435
Score = 31.9 bits (69), Expect = 1.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 540 CEDPDDPCYCSGPKTATKQQMACRNTDQYCLHVPKDC 430
C D +D YC+ P T+ Q C D CL + K C
Sbjct: 333 CPDGEDEEYCNYPNVCTEDQFKC---DDKCLELKKRC 366
>AE014298-404|AAF45787.2| 4629|Drosophila melanogaster CG33950-PF,
isoform F protein.
Length = 4629
Score = 31.9 bits (69), Expect = 1.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 540 CEDPDDPCYCSGPKTATKQQMACRNTDQYCLHVPKDC 430
C D +D YC+ P T+ Q C D CL + K C
Sbjct: 379 CPDGEDEEYCNYPNVCTEDQFKC---DDKCLELKKRC 412
>AY113360-1|AAM29365.1| 662|Drosophila melanogaster HL08076p
protein.
Length = 662
Score = 31.1 bits (67), Expect = 2.0
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = -3
Query: 306 GQLMPTNVEGYPGVVYDFPKQVIKLRIGKTIEMPGRKTKLEYQFITPVATREKNVPVKDT 127
GQL+ N+E PG + D ++V + + + +T+ Q + AT EK +PVK
Sbjct: 395 GQLVVQNIELPPGFIDDIVERVQREQRPSLLT---TETQTSRQASSEPATSEKELPVKPP 451
Query: 126 R---TAQCVPPS 100
R T + VPP+
Sbjct: 452 RHSKTTEQVPPA 463
>AY061028-1|AAL28576.1| 721|Drosophila melanogaster HL05638p
protein.
Length = 721
Score = 31.1 bits (67), Expect = 2.0
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = -3
Query: 306 GQLMPTNVEGYPGVVYDFPKQVIKLRIGKTIEMPGRKTKLEYQFITPVATREKNVPVKDT 127
GQL+ N+E PG + D ++V + + + +T+ Q + AT EK +PVK
Sbjct: 454 GQLVVQNIELPPGFIDDIVERVQREQRPSLLT---TETQTSRQASSEPATSEKELPVKPP 510
Query: 126 R---TAQCVPPS 100
R T + VPP+
Sbjct: 511 RHSKTTEQVPPA 522
>AE014296-1482|AAN12010.2| 721|Drosophila melanogaster CG32355-PA
protein.
Length = 721
Score = 31.1 bits (67), Expect = 2.0
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = -3
Query: 306 GQLMPTNVEGYPGVVYDFPKQVIKLRIGKTIEMPGRKTKLEYQFITPVATREKNVPVKDT 127
GQL+ N+E PG + D ++V + + + +T+ Q + AT EK +PVK
Sbjct: 454 GQLVVQNIELPPGFIDDIVERVQREQRPSLLT---TETQTSRQASSEPATSEKELPVKPP 510
Query: 126 R---TAQCVPPS 100
R T + VPP+
Sbjct: 511 RHSKTTEQVPPA 522
>AE014298-1331|AAF46494.1| 4547|Drosophila melanogaster CG12139-PB
protein.
Length = 4547
Score = 30.7 bits (66), Expect = 2.7
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = -3
Query: 564 KDHYNSMPCEDPDDPCYCSGPKTATKQQMACRNTDQYCLHVPKDCCPTGN 415
+D Y + + D P CS T TK C TD Y L K C N
Sbjct: 1286 EDGYTCIDSNECDPPGLCSQQCTNTKGSYFCSCTDGYVLEPNKHTCKAVN 1335
>AE014134-2707|AAN10938.1| 2282|Drosophila melanogaster CG31817-PA
protein.
Length = 2282
Score = 29.9 bits (64), Expect = 4.7
Identities = 23/80 (28%), Positives = 36/80 (45%)
Frame = -3
Query: 291 TNVEGYPGVVYDFPKQVIKLRIGKTIEMPGRKTKLEYQFITPVATREKNVPVKDTRTAQC 112
TN + P +F +Q K +I ++ E R + + + P T K + T+ +
Sbjct: 544 TNFQSQPLNEVEFKQQKTKSQIIESQEDQERLVQSSSETLLPKVTAPKKKKLISTKKRKS 603
Query: 111 VPPSHSCCSPKTSRKN*IKK 52
S SCCS +SRK KK
Sbjct: 604 -SRSCSCCSRTSSRKRSAKK 622
>AY051948-1|AAK93372.1| 382|Drosophila melanogaster LD42063p
protein.
Length = 382
Score = 29.5 bits (63), Expect = 6.2
Identities = 9/42 (21%), Positives = 22/42 (52%)
Frame = +1
Query: 145 IFFSCGHGSYELILKFCLSTRHLNRFTNSKLNHLLWKIIYYS 270
+ SCG+ +++ + +F L + + F ++W I +Y+
Sbjct: 55 VALSCGYYAFQRLFQFFLKSSSMKHFQRRLFARVIWNIAFYA 96
>AE014298-1163|AAF46360.3| 382|Drosophila melanogaster CG1636-PA
protein.
Length = 382
Score = 29.5 bits (63), Expect = 6.2
Identities = 9/42 (21%), Positives = 22/42 (52%)
Frame = +1
Query: 145 IFFSCGHGSYELILKFCLSTRHLNRFTNSKLNHLLWKIIYYS 270
+ SCG+ +++ + +F L + + F ++W I +Y+
Sbjct: 55 VALSCGYYAFQRLFQFFLKSSSMKHFQRRLFARVIWNIAFYA 96
>AE014134-1954|AAF53012.2| 777|Drosophila melanogaster CG31869-PA
protein.
Length = 777
Score = 29.5 bits (63), Expect = 6.2
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Frame = -3
Query: 576 CPEEKD---HYNSMPCEDPDDP---CYCSGPKTATKQQMACRNTDQYCLHVPKDCCP 424
C EKD + N PD P CYC G + R D +VP CCP
Sbjct: 172 CDCEKDGKTYANGDKLVAPDTPCTVCYCKGGEIVCSPVTCYRRDDCMPKYVPGRCCP 228
>AY070707-1|AAL48178.1| 418|Drosophila melanogaster RH60875p
protein.
Length = 418
Score = 29.1 bits (62), Expect = 8.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 132 DTRTAQCVPPSHSCCSPKTSRKN*IKKRLHKMF 34
DTRTA PP CSP+ R + R+H+ +
Sbjct: 230 DTRTAVDCPPGGGSCSPEVQRLGFEEIRVHERY 262
>AE014297-4572|AAF57030.1| 418|Drosophila melanogaster CG9733-PA
protein.
Length = 418
Score = 29.1 bits (62), Expect = 8.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 132 DTRTAQCVPPSHSCCSPKTSRKN*IKKRLHKMF 34
DTRTA PP CSP+ R + R+H+ +
Sbjct: 230 DTRTAVDCPPGGGSCSPEVQRLGFEEIRVHERY 262
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,821,180
Number of Sequences: 53049
Number of extensions: 967146
Number of successful extensions: 2586
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2586
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4147514904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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