Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11d03
(860 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical pr... 36 0.028
Z78200-8|CAB01583.2| 368|Caenorhabditis elegans Hypothetical pr... 35 0.086
Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr... 30 2.4
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 29 3.2
AL132876-15|CAD21668.2| 722|Caenorhabditis elegans Hypothetical... 29 4.3
AB096636-1|BAC76736.1| 722|Caenorhabditis elegans tyrosyl-tRNA ... 29 4.3
Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical pr... 28 7.4
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 28 7.4
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr... 28 7.4
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr... 28 7.4
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr... 28 7.4
U42839-4|AAM54197.1| 114|Caenorhabditis elegans Hypothetical pr... 28 9.8
U42839-3|AAC69014.1| 152|Caenorhabditis elegans Hypothetical pr... 28 9.8
AL590343-1|CAC35865.1| 387|Caenorhabditis elegans Hypothetical ... 28 9.8
AL032622-1|CAA21497.1| 387|Caenorhabditis elegans Y66A7A.1 prot... 28 9.8
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 28 9.8
AC006777-7|AAK72306.2| 367|Caenorhabditis elegans Seven tm rece... 28 9.8
>U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical
protein D1044.7 protein.
Length = 400
Score = 36.3 bits (80), Expect = 0.028
Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 7/159 (4%)
Frame = -3
Query: 780 MFLRISCFGKLIITRFQGAGPPNLS--SAGNSSVVDRSCNPRKDFQTTQDPCACGTANAF 607
M L ++ + +IT F PP L ++ N+ +C P QDPC+C + +A
Sbjct: 1 MILLLTLWTTFVITAFSQC-PPGLIPLTSNNNFNQPLTCTP-------QDPCSCFSVSA- 51
Query: 606 KKKGITELAACPEEKDHYNSMPCEDPDDPCYC-SGPKTATKQQMACRNTDQYCL--HVPK 436
+ G A C ++ N + C + C S P+ + Q+ T+ C ++
Sbjct: 52 -RYG----AICHYSSNYNNYLCCHSQNTQCGTNSSPQVSASGQVVTCFTNSQCASGYICS 106
Query: 435 D--CCPTGNKVIFQIPSDSCGMGHKQRAHFNFNSDGVGD 325
+ CCP N C G FNS +GD
Sbjct: 107 NGACCPNTNSNTCSTTGTPCFTGQISVGGQCFNSVNIGD 145
>Z78200-8|CAB01583.2| 368|Caenorhabditis elegans Hypothetical
protein T04H1.6 protein.
Length = 368
Score = 34.7 bits (76), Expect = 0.086
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 570 EEKDHYNSMP-CEDPDDPCYCSGPKTATKQQMACRNTDQYCLHVPKDC 430
E +H N++ C + D +C+ T T+ + AC Q C+HV K C
Sbjct: 182 ENCNHKNAIKFCPEYDHVMHCTIKDTCTENEFACCAMPQSCIHVSKRC 229
>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical protein
C05D12.2 protein.
Length = 1052
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 353 K*ARCLCPIPQESDGIWNMTLFPVGQQSFGTC 448
K RC+CP D W+ P SFG C
Sbjct: 965 KFGRCICPSRYTGDYCWDRICHPPATYSFGIC 996
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Frame = -3
Query: 318 RDEPGQLMPTNVEGYPGVVYDFPKQVIK---LRIGKTIEMPGRKTKLEYQFITPVATREK 148
R PG P PG Y +P Q+++ + G + MP T E+ +
Sbjct: 120 RHHPGYPHPAYGYPPPGAPYGYPPQMMRPPMMAPGDMVRMPPGPTPTEWAAQQQAQAASR 179
Query: 147 NVPVKDTRTAQCVPPSHS 94
+VP K+ PS S
Sbjct: 180 SVPPKEGPNGNPATPSSS 197
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Frame = -3
Query: 714 NLSSAGNSSVVDRSCNPRKDFQTTQDPCACGTA---NAFKKKGITELAACPEEKDHYNSM 544
N SS NS +C F++ C+C + + KK +CP+ + +
Sbjct: 411 NCSSTRNSCDQTWNCQRHAGFES----CSCDDGYHLSPYDKKTCLRSPSCPKANCSHFCI 466
Query: 543 PCEDPDDPCYCSGPKTATKQQMACRNTD 460
D C+C+ ++ Q CR D
Sbjct: 467 DRRDVGHQCFCAPGYILSENQKDCRRND 494
>AL132876-15|CAD21668.2| 722|Caenorhabditis elegans Hypothetical
protein Y105E8A.19 protein.
Length = 722
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +2
Query: 263 TTPG*PSTLVGINWPGSSLDISPTPSELKLK*ARCLCPIPQESDG 397
T PG + + P LD TP +LK K AR C PQ DG
Sbjct: 578 TIPGCNGQKMSCSIPDFLLDPLDTPKQLKTKIARSFCE-PQNLDG 621
>AB096636-1|BAC76736.1| 722|Caenorhabditis elegans tyrosyl-tRNA
synthetase (cytoplasmic)protein.
Length = 722
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +2
Query: 263 TTPG*PSTLVGINWPGSSLDISPTPSELKLK*ARCLCPIPQESDG 397
T PG + + P LD TP +LK K AR C PQ DG
Sbjct: 578 TIPGCNGQKMSCSIPDFLLDPLDTPKQLKTKIARSFCE-PQNLDG 621
>Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical
protein F46B3.2 protein.
Length = 190
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Frame = -3
Query: 615 NAFKKKGITELAACPE----EKDHYNSMPCEDPDDPCYCSGPKTATKQQMACRNTDQYCL 448
++F K + + +C + +K Y C+ DP CS T M+ TDQY
Sbjct: 37 DSFTKLQVFQFRSCDKSFLAKKKKYTCGLCKK--DPNVCSDTCTVCPMDMSPCETDQYQK 94
Query: 447 HVPKDC--CP 424
PK C CP
Sbjct: 95 ICPKTCNVCP 104
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
protein H03E18.1 protein.
Length = 1147
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 519 CYCSGPKTATKQQMACRNTDQYCLHVPKDC 430
C C+ KT+ + + CR+ Y H +DC
Sbjct: 475 CMCANSKTSRRYEFQCRSATYY--HAERDC 502
>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical protein
C37C3.6c protein.
Length = 1487
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = -3
Query: 552 NSMPCEDPDDPCYCSGPKTAT-KQQMACRNTDQYCLHVPKDCCPTGNKVIFQIPSDSCG 379
+S PCE D C G A K C + CL CCP G ++ CG
Sbjct: 910 SSFPCELSDFGCCPDGETAALGKNGTGC---GENCLTTKFGCCPDGKTTAKGSHNEGCG 965
>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical protein
C37C3.6a protein.
Length = 1558
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = -3
Query: 552 NSMPCEDPDDPCYCSGPKTAT-KQQMACRNTDQYCLHVPKDCCPTGNKVIFQIPSDSCG 379
+S PCE D C G A K C + CL CCP G ++ CG
Sbjct: 910 SSFPCELSDFGCCPDGETAALGKNGTGC---GENCLTTKFGCCPDGKTTAKGSHNEGCG 965
>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical protein
C37C3.6b protein.
Length = 2167
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = -3
Query: 552 NSMPCEDPDDPCYCSGPKTAT-KQQMACRNTDQYCLHVPKDCCPTGNKVIFQIPSDSCG 379
+S PCE D C G A K C + CL CCP G ++ CG
Sbjct: 910 SSFPCELSDFGCCPDGETAALGKNGTGC---GENCLTTKFGCCPDGKTTAKGSHNEGCG 965
>U42839-4|AAM54197.1| 114|Caenorhabditis elegans Hypothetical
protein F11C7.7 protein.
Length = 114
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -3
Query: 513 CSGPKTATKQQMACRNTDQYCLHVPKDCCPTGNKVIFQIPS 391
CSG T + C ++D C+ CCP K IP+
Sbjct: 69 CSGDGT---ESQPCSSSDNICMAPSPSCCPHTYKKTVDIPN 106
>U42839-3|AAC69014.1| 152|Caenorhabditis elegans Hypothetical
protein F11C7.2 protein.
Length = 152
Score = 27.9 bits (59), Expect = 9.8
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Frame = -3
Query: 588 ELAACPEE----KDHYNSMPCED-PDDP-CYCSGPKTATKQQMACRNTDQYCLHVPKDCC 427
E AAC E H + CE P+ P C+G ++ C +TD+ CL CC
Sbjct: 77 EWAACDNECGFCGTHARTRTCELLPECPLALCTGDDNESEP---CSDTDKVCLAPSPSCC 133
Query: 426 PTGNKVIFQIPSDS--CGM 376
G K IP+ CG+
Sbjct: 134 -NGYKKKVDIPTKRFYCGL 151
>AL590343-1|CAC35865.1| 387|Caenorhabditis elegans Hypothetical
protein Y66A7A.1 protein.
Length = 387
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 405 FQIPSDSCGMGHKQRAHFNFNSDGV--GDISRD 313
FQ+ SDS G G + HFN+ +G+ G +S D
Sbjct: 51 FQLLSDSLGQGFMEYNHFNYWFEGLANGTLSLD 83
>AL032622-1|CAA21497.1| 387|Caenorhabditis elegans Y66A7A.1
protein.
Length = 387
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 405 FQIPSDSCGMGHKQRAHFNFNSDGV--GDISRD 313
FQ+ SDS G G + HFN+ +G+ G +S D
Sbjct: 51 FQLLSDSLGQGFMEYNHFNYWFEGLANGTLSLD 83
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Frame = -3
Query: 555 YNSMPCED--PDDPCYCSGPKTATKQQMACRNTDQYCLHVPKDCCP 424
Y PC P+ C C P + C + C + CCP
Sbjct: 164 YGRTPCRSGCPNGDCGCGRPCCYYQNPTCCNQGQKACCPPEQPCCP 209
>AC006777-7|AAK72306.2| 367|Caenorhabditis elegans Seven tm
receptor protein 222 protein.
Length = 367
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -1
Query: 389 ILVVWDINNVLISILTPMALVIYPGMN 309
IL ++DIN+ +IS L M++ +YP ++
Sbjct: 276 ILCIFDINDDVISGLAVMSIAVYPAID 302
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,271,699
Number of Sequences: 27780
Number of extensions: 512996
Number of successful extensions: 1386
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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