Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11d03
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    27   0.29 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     26   0.51 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   6.3  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 204 QASQSFYQF*A*SLALENHILLRDNLPRWLALIGLVHPWI 323
           Q + ++Y F   SLA+ + ILL   LP  L+L    +PW+
Sbjct: 72  QTATNYYLF---SLAISDLILLVLGLPNELSLFWQQYPWV 108


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 231 RIGKTIEMPGRKTKLEY-QFITPVATREKNVPVKDTRTAQCVPPSHS 94
           ++ + IE  G K  L Y QF T VA+ +   P   T T+ CV  +++
Sbjct: 152 KLDEIIERNGDKPPLTYHQFQTVVASMDPPEPPVPTVTSACVGSAYT 198


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -3

Query: 546 MPCEDPDDPCYCSGPKTATKQQMACR 469
           M  + P+ P YC+    AT     CR
Sbjct: 1   MEFKQPNRPSYCTWELNATNSPHTCR 26


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 112 TLSSTSIFNRNIFFSCGHGSYELI-LKFCLSTRHLNRFT 225
           T S TS+F  N+   CG+   +L+  K  +S   ++  T
Sbjct: 457 THSGTSLFRINLGIECGYEIKKLLRYKLLISQNAVSELT 495


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 259,338
Number of Sequences: 438
Number of extensions: 6969
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)