Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11d02
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0603 + 26539104-26539148,26539941-26540046,26540465-265406... 75 8e-14
05_03_0425 - 13808840-13809414,13809552-13809765,13810268-138113... 39 0.004
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53... 39 0.005
03_05_1133 - 30614901-30615389,30615823-30615933,30616113-306161... 38 0.007
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45... 38 0.009
03_02_0413 - 8224494-8224553,8224838-8225004,8225666-8225771,822... 32 0.58
09_06_0300 - 22126177-22126434,22126892-22127274,22128596-22129064 31 0.77
08_02_0519 - 18097509-18097726,18097803-18097967,18098095-180983... 31 0.77
06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245 31 1.3
03_01_0204 + 1611837-1611840,1611926-1612048,1614570-1614659,161... 30 1.8
09_02_0467 - 9602816-9602881,9603016-9603097,9603184-9603291,960... 29 3.1
03_06_0514 + 34450178-34450244,34450821-34451047,34451140-344512... 29 5.4
01_03_0199 - 13730219-13730681,13731039-13731232,13731280-13731516 28 9.5
>04_04_0603 +
26539104-26539148,26539941-26540046,26540465-26540603,
26540837-26540945,26541030-26541166,26541610-26541746,
26542184-26542290,26542483-26542610,26543418-26543469
Length = 319
Score = 74.5 bits (175), Expect = 8e-14
Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
Frame = -1
Query: 771 RPQHAVHTDIIHYVADNISIPVIANGGSKEIEKHSDVAIFKEMTGSSSVMLARAAEWNCS 592
RP+ D I V +SIPVIANG ++ ++ D K+ TG++SVM+AR A WN S
Sbjct: 184 RPRDPAKWDEIADVVSALSIPVIANG---DVFEYEDFKRIKDATGAASVMVARGAMWNAS 240
Query: 591 IFRKEGLLPMDTVIKDYLKLAVDYDNSPSNTKYCIQNILRDLQ--ETPRGRQFLESQTLE 418
IF +G P + V ++Y++ ++ +DN +TK I+ ++ E P G+ + T+
Sbjct: 241 IFCPKGKTPWEDVKREYVRKSILWDNDLKSTKQTIKEMIMHYSCLEFPEGKGVNKCDTIA 300
Query: 417 QICSIW 400
+ ++
Sbjct: 301 DLAKLY 306
>05_03_0425 -
13808840-13809414,13809552-13809765,13810268-13811317,
13811616-13811687,13812075-13812334,13812647-13812731
Length = 751
Score = 39.1 bits (87), Expect = 0.004
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -1
Query: 204 KSRLHAWAGKNGYSLPKYNTQHI----EKLFRTIVTFNEKKYTSTFWEKNKKFAEQGAAL 37
KSRL +A K G P+Y+T E +F++ V N Y S N+K AEQ AA
Sbjct: 37 KSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAE 96
Query: 36 VCL 28
V L
Sbjct: 97 VAL 99
>12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-538255,
538601-538860,539950-540073,540978-541310,541447-541531,
541683-541768,541843-541941,542041-542180,542717-543043,
543163-543774,543887-543971,543972-544067,544147-544500,
544536-544559,544597-544707,544811-544894,545468-545546,
546122-546279,546412-546528,546622-546780,546857-546939,
547525-547627,549184-549495
Length = 1925
Score = 38.7 bits (86), Expect = 0.005
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = -1
Query: 204 KSRLHAWAGKNGYSLPKYNT-----QHIEKLFRTIVTFNEKKYTSTFWEKNKKFAEQGAA 40
KSRL +A K G P+Y+T H E +F++ V N Y S N+K AEQ AA
Sbjct: 1199 KSRLQEYAQKTGLQTPEYHTFKEGPSH-EPVFKSTVVINNTSYDSLPGFFNRKAAEQSAA 1257
Query: 39 LVCL 28
V L
Sbjct: 1258 EVAL 1261
>03_05_1133 - 30614901-30615389,30615823-30615933,30616113-30616178,
30616347-30616406,30616493-30616801,30616960-30617108,
30617200-30617269,30617370-30617494,30617516-30617573,
30618176-30618370,30618585-30618857,30618950-30619120,
30619203-30619333,30619423-30619582,30619712-30619900,
30620023-30620118,30620381-30620611,30620715-30620853,
30620903-30621057,30621160-30621378
Length = 1131
Score = 38.3 bits (85), Expect = 0.007
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = -1
Query: 207 PKSRLHAWAGKNGYSLPKYNTQHIE-KLFRTIVTFNEKKYTSTFWEKNKKFAEQGAALVC 31
PKS L + G++ PKY T+H++ FR IV F ++ ++NK+ AE+ AA+
Sbjct: 1029 PKSLLQTLLMRAGHTPPKYKTKHLKTNEFRAIVEFKGMQFAGK-PKRNKQLAERDAAIEA 1087
Query: 30 L 28
L
Sbjct: 1088 L 1088
>11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-459581,
459924-460183,461834-461918,462587-462919,463053-463137,
463289-463374,463455-463556,463656-463795,464332-464658,
464778-465389,465502-465586,465587-465682,465762-466115,
466212-466322,466426-466509,467086-467164,467742-467899,
468034-468150,468240-468398,468475-468557,469098-469200,
470784-471080
Length = 1899
Score = 37.9 bits (84), Expect = 0.009
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = -1
Query: 204 KSRLHAWAGKNGYSLPKYNT-----QHIEKLFRTIVTFNEKKYTSTFWEKNKKFAEQGAA 40
KSRL +A K G P+Y+T H E +F++ V N Y S N+K AEQ AA
Sbjct: 1174 KSRLQEYAQKAGLQTPEYHTFKEGPSH-EPVFKSTVVINNTSYDSLPGFFNRKAAEQSAA 1232
Query: 39 LVCL 28
V L
Sbjct: 1233 EVAL 1236
>03_02_0413 -
8224494-8224553,8224838-8225004,8225666-8225771,
8226068-8226105,8226177-8226264,8226688-8226741,
8226810-8226918,8227280-8227362,8227444-8227506,
8227585-8227647,8227906-8227977,8228056-8228094,
8228182-8228237,8228316-8228375,8228444-8228558,
8228590-8228810,8228978-8229259,8229390-8229504
Length = 596
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = -1
Query: 747 DIIHYVADNISIPVIANGGSKEIEKHSDVAIFKEMTGSSSVMLA 616
D++ V+D ++IPVIA+ G+ +E S+V E T +S+ + A
Sbjct: 530 DLVKMVSDAVTIPVIASSGAGTVEHFSEVF---EKTNASAALAA 570
>09_06_0300 - 22126177-22126434,22126892-22127274,22128596-22129064
Length = 369
Score = 31.5 bits (68), Expect = 0.77
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = -1
Query: 711 PVIANGGSKEIEKHSDVAIFKEMTGSSSVMLARAAEWNCSIFRKEGLL--PMDTVIKDYL 538
PV+ G+ + ++VA+ K+ V + A N ++ K+G+ P T I ++
Sbjct: 242 PVVKMDGAASVPSSNEVAL-KQSVYKQPVSVLIEANSNFQLY-KQGVYSGPCGTSI-NHA 298
Query: 537 KLAVDYDNSPSNTKYCI 487
LAV Y +P NTKY I
Sbjct: 299 VLAVGYGATPDNTKYWI 315
>08_02_0519 -
18097509-18097726,18097803-18097967,18098095-18098305,
18099151-18099419,18100915-18101017
Length = 321
Score = 31.5 bits (68), Expect = 0.77
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = -1
Query: 204 KSRLHAWAGKNGYSLPKYNT----QHIEKLFRTIVTFNEKKYTSTFWEKNKKFAEQGAAL 37
KS+L + + LP Y T +H + F++ V + ++++STF + K AEQ AA
Sbjct: 40 KSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAAK 99
Query: 36 V 34
V
Sbjct: 100 V 100
>06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245
Length = 396
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -1
Query: 747 DIIHYVADNISIPVIANGGSKEIEKHSDVAIFKEMTGSSSVMLARAAEWNCSIF 586
D I V D + IPV+ANG + ++ DV E TG+ V+ A N ++F
Sbjct: 235 DAIKAVKDALRIPVLANGNIRHLD---DVKDCLEHTGADGVLSAETLLENPALF 285
>03_01_0204 +
1611837-1611840,1611926-1612048,1614570-1614659,
1615529-1616095,1616235-1616959,1617065-1617252,
1617331-1617778
Length = 714
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 366 VIVFLNSILLNPKWSIFALKFDFPRTVFL 452
++VFL S+ LNP W I P VFL
Sbjct: 196 IMVFLMSLTLNPNWRIMLGSLSIPSFVFL 224
>09_02_0467 -
9602816-9602881,9603016-9603097,9603184-9603291,
9603803-9603900,9603986-9604084,9604202-9604339,
9604748-9604799,9604876-9604989,9605054-9605142,
9605674-9605707,9605900-9606019,9606138-9606220
Length = 360
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 462 ETPRGRQFLESQT-LEQICSIWDLGGYCLEKQSQFQ 358
++P GR + T L IC IWDL GY L S+FQ
Sbjct: 63 KSPHGRDGINICTALNWICIIWDL-GYLLTYPSKFQ 97
>03_06_0514 +
34450178-34450244,34450821-34451047,34451140-34451275,
34451818-34451951,34452037-34452142,34452602-34452687,
34453204-34453365,34453918-34454034,34454222-34454464
Length = 425
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 157 WQTVPILSSPSMKSAFR*IQVIEICSNKG 243
W+T P+ + +++AF Q +E CS+KG
Sbjct: 144 WETKPLSWAMRVRAAFYVAQALEYCSSKG 172
>01_03_0199 - 13730219-13730681,13731039-13731232,13731280-13731516
Length = 297
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 264 DAIQMKVSFIRANFNDLNLPKSRLHAWAGKNGYSLP 157
+A+ V +R + DLN RLH G G+S P
Sbjct: 240 EALHEDVRGLRTDVGDLNASVGRLHTRVGNIGFSSP 275
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,317,287
Number of Sequences: 37544
Number of extensions: 376660
Number of successful extensions: 868
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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