Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11d02
(771 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032643-4|CAA21662.1| 436|Caenorhabditis elegans Hypothetical ... 97 9e-21
U21323-13|AAA62547.2| 284|Caenorhabditis elegans Hypothetical p... 40 0.001
Z81028-4|CAB02692.2| 365|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z69790-1|CAA93654.2| 427|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z92786-3|CAB63202.1| 488|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z81028-5|CAI91176.1| 224|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 28 8.5
AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical ... 28 8.5
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 28 8.5
AC024775-1|AAK68455.1| 456|Caenorhabditis elegans Hypothetical ... 28 8.5
>AL032643-4|CAA21662.1| 436|Caenorhabditis elegans Hypothetical
protein Y54E5A.6 protein.
Length = 436
Score = 97.5 bits (232), Expect = 9e-21
Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 4/249 (1%)
Frame = -1
Query: 747 DIIHYVADNI-SIPVIANGGSKEIEKHSDVAIFKEMTGSSSVMLARAAEWNCSIFRKEGL 571
D I VA + SIPVI+NG S EIE++SD ++ +T +SS M+AR A SIFR+EG
Sbjct: 192 DEIRDVAQAVQSIPVISNGLSDEIEQYSDFEKYQLLTETSSTMIARKALSTPSIFRREGC 251
Query: 570 LPMDTVIKDYLKLAVDYDNSPSNTKYCIQNIL-RDLQETPRGRQFLESQTLEQICSIWDL 394
L I+++L+LA YD S + TKY +Q IL D + PRG+ + + ++ QIC
Sbjct: 252 LDKYEDIRNFLELACQYDESYTMTKYVVQRILGADQEYDPRGKATVAAGSVLQIC----- 306
Query: 393 GGYCLEKQSQFQKMGIQGRWQVCPKQLEPPQKKAKHYNEEDLCD-AIQMKVSFIRANFND 217
F + +W+ ++ + KK +++ + + + + ++ +
Sbjct: 307 --------KAFGMEDVYDKWR--DERKKKQSKKRARVDDDGVYNIEVSFPLKRLKNSVGF 356
Query: 216 LNLPKSRLHAWAGKNGYSLPKYN-TQHIEKLFRTIVTFNEKKYTSTFWEKNKKFAEQGAA 40
PK LH + + Y + +K F +KKY S + N + AEQ AA
Sbjct: 357 SPTPKMVLHDYCVETKIPKATYEVVKRDDKRFVATACIGDKKYRSGIGQPNLRMAEQVAA 416
Query: 39 LVCLHHLGI 13
L LH + I
Sbjct: 417 LAALHGMNI 425
>U21323-13|AAA62547.2| 284|Caenorhabditis elegans Hypothetical
protein C45G9.2 protein.
Length = 284
Score = 40.3 bits (90), Expect = 0.001
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Frame = -1
Query: 765 QHAVHTDI--IHYVADNISIPVIANGGSKEIEKHSDVAIFKEMTGSSSVMLARAAEWNCS 592
Q A DI + V D++S+P+IANGG I + E TG +M A N +
Sbjct: 159 QRAEPIDIQALRIVKDSVSVPIIANGG---ITTREEALFLAEQTGVDGIMAANGLLDNPA 215
Query: 591 IFRKEGLLPMDTVIKDYLKLAVDYDNSPSNTKYCIQNILRDLQETPRGRQFLE 433
+F P D V +++++L+ +Y +Q +LR + + R F E
Sbjct: 216 LFAGHEHTPSDCV-ENFMRLSREYGLDWLLYHQHLQYMLRPVFSAQQRRVFNE 267
>Z81028-4|CAB02692.2| 365|Caenorhabditis elegans Hypothetical
protein B0365.5a protein.
Length = 365
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/59 (22%), Positives = 28/59 (47%)
Frame = -1
Query: 540 LKLAVDYDNSPSNTKYCIQNILRDLQETPRGRQFLESQTLEQICSIWDLGGYCLEKQSQ 364
+ L+V + P+ C+ L L + R ++ + E++C + + G +C K +Q
Sbjct: 150 ISLSVSAETDPNAPSECLSKCLTPLAKLQRSFSYVFNN-FEKVCDLLEDGAFCARKCTQ 207
>Z69790-1|CAA93654.2| 427|Caenorhabditis elegans Hypothetical
protein F33C8.2 protein.
Length = 427
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Frame = -1
Query: 321 KQLEPPQK-KAKHYNE------EDLCDAIQMKVSFIRANFNDLNLPKSRLHAWAGK 175
KQ EP QK AK+Y + +++CDA +++V+ +R + NLP++ A+ K
Sbjct: 242 KQGEPFQKLSAKNYVDAALDIFQEICDAPKLEVNALRVEVAEQNLPETTRSAFFEK 297
>Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical
protein T07D4.3 protein.
Length = 1301
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = -1
Query: 204 KSRLHAWAGKNGYSLPKYNTQHI----EKLFRTIVTFNEKKYTSTFWEKNKKFAEQGAA 40
K L+AW GKN Y P Y+T+ + F+ + YT+ NKK A AA
Sbjct: 6 KEFLYAWLGKNKYGNPTYDTKSETRSGRQRFKCELRITGFGYTAFGNSTNKKDAATNAA 64
>Z92786-3|CAB63202.1| 488|Caenorhabditis elegans Hypothetical
protein F47H4.6 protein.
Length = 488
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = -1
Query: 180 GKNGYSLPKYNTQHIEKLFRTIVTFNEKKYTSTFWEKNK-KFAEQGA-ALVCLHHLGIVS 7
G SL YNT+ I + VT++EKK ST K++ + + G+ + + LH +V
Sbjct: 234 GVEKISLKIYNTKSIVQFDEKEVTYHEKKNDSTSHNKDQGMYIKDGSHSKMALHDWSVVM 293
Query: 6 ED 1
++
Sbjct: 294 QN 295
>Z81028-5|CAI91176.1| 224|Caenorhabditis elegans Hypothetical
protein B0365.5b protein.
Length = 224
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = -1
Query: 534 LAVDYDNSPSNTKYCIQNILRDLQETPRGRQFLESQTLEQICSIWDLGGYCLEKQSQ 364
L+V + P+ C+ L L + R ++ + E++C + + G +C K +Q
Sbjct: 12 LSVSAETDPNAPSECLSKCLTPLAKLQRSFSYVFNN-FEKVCDLLEDGAFCARKCTQ 67
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 765 QHAVHTDIIHYVADNISIPVIANGGSKEI 679
++ +D + Y D + PVI+NGG+K++
Sbjct: 4027 ENVAGSDNLMYNVDVVQAPVISNGGTKQV 4055
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 765 QHAVHTDIIHYVADNISIPVIANGGSKEI 679
++ +D + Y D + PVI+NGG+K++
Sbjct: 4027 ENVAGSDNLMYNVDVVQAPVISNGGTKQV 4055
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 765 QHAVHTDIIHYVADNISIPVIANGGSKEI 679
++ +D + Y D + PVI+NGG+K++
Sbjct: 4027 ENVAGSDNLMYNVDVVQAPVISNGGTKQV 4055
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 765 QHAVHTDIIHYVADNISIPVIANGGSKEI 679
++ +D + Y D + PVI+NGG+K++
Sbjct: 4027 ENVAGSDNLMYNVDVVQAPVISNGGTKQV 4055
>AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical
protein D1037.1 protein.
Length = 786
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -1
Query: 168 YSLPKYNTQHIEKLFRTIVTFNEKKYTSTFWEKNKKFAEQGAALVCLHHLGIVSED 1
+S + H+ K+F + N+ +Y K KK + AA V L LG++ D
Sbjct: 725 FSCEESGADHL-KMFVWTIVINDVEYRPMCGSKQKKEGKAVAAQVALQSLGVLPMD 779
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 765 QHAVHTDIIHYVADNISIPVIANGGSKEI 679
++ +D + Y D + PVI+NGG+K++
Sbjct: 4027 ENVAGSDNLMYNVDVVQAPVISNGGTKQV 4055
>AC024775-1|AAK68455.1| 456|Caenorhabditis elegans Hypothetical
protein Y41D4A.5 protein.
Length = 456
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = -1
Query: 156 KYNTQHIEKLFRTIVTFNEKKYTSTFWEKNKKFAEQGAALVCLHHLGIVSE 4
K T H +F ++T +++ + + +F + A C HLGI+ E
Sbjct: 314 KAETLHSIDIFGLVMTLRKQRASMVQTQDQFQFVHRCIASYCRRHLGIIEE 364
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,547,992
Number of Sequences: 27780
Number of extensions: 371725
Number of successful extensions: 936
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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