Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11d02
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   1.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   4.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   4.2  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   7.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   7.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   7.3  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   9.6  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 656 IATSLCFSISLDPPFAMTGIDMLSAT**IMSVWTA 760
           I T+ C +  LD P  ++G  + + T  ++  W A
Sbjct: 392 IPTTTCIARILDEPIELSGYRLTAGTVVLLHTWIA 426


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 171 GYSLPKYNTQHIEKLFRTIVTFNEKKYTSTFWEKNKKFA 55
           G+S        + + ++T+    EKK  ++F+   KKFA
Sbjct: 429 GFSSSSNTWLRVNENYKTVNLAAEKKDKNSFFNMFKKFA 467


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 171 GYSLPKYNTQHIEKLFRTIVTFNEKKYTSTFWEKNKKFA 55
           G+S        + + ++T+    EKK  ++F+   KKFA
Sbjct: 429 GFSSSSNTWLRVNENYKTVNLAAEKKDKNSFFNMFKKFA 467


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 173 MGTVCQSITLNILR 132
           +G VCQ  T NILR
Sbjct: 10  LGIVCQGTTGNILR 23


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 173 MGTVCQSITLNILR 132
           +G VCQ  T NILR
Sbjct: 10  LGIVCQGTTGNILR 23


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 173 MGTVCQSITLNILR 132
           +G VCQ  T NILR
Sbjct: 10  LGIVCQGTTGNILR 23


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 253 LYCITQIFFII 285
           LYC  ++FFII
Sbjct: 7   LYCFARLFFII 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,813
Number of Sequences: 438
Number of extensions: 4328
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)