Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11d01
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    54   2e-08
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    29   0.82 
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    28   1.9  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    27   2.5  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   3.3  
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    27   4.4  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    26   7.7  

>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 1/171 (0%)
 Frame = -3

Query: 702 EEYNNMQNSMLPTVKDDFITNIKRTLYIRYAKLLNCKYIFXXXXXXXXXXXXXXXLAIGR 523
           E++N    S L + + D +  I+  L + YA+  NC  I                +A GR
Sbjct: 155 EKFNPEVISSLAS-RQDLLYRIRDKLLVSYARKANCDTIVFGDSGTTIAARVLELVAEGR 213

Query: 522 GSQVQSDVGFLDSR-DMEIKIIRPMKDISEEELKLYINSKNLKVNDKQTSKENEHTSLQT 346
           G  +           + +  ++RP++++   +LK Y+N K L   D     E    ++  
Sbjct: 214 GFAIPWYTSVCSKLPNCDTFLLRPLREVLSSDLKSYMNIKGLAFCDSLI--EARPNTIHG 271

Query: 345 VISTFVSSLQENFPSTISTICKTADKIGLQDECDNERHNMCVICQSILKPD 193
           V  ++ SSL + FPS +ST+ K + K+ +          +C IC   ++ D
Sbjct: 272 VTESYFSSLNDTFPSLVSTVVKMSSKLHVP-----STEAICTICNLPMQED 317


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 17/61 (27%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
 Frame = -3

Query: 777 ISEYVQSKSHIPIVNSLPIVNNEL--IEEYNNMQNSMLPTVKDDFITNIKRTLYIRYAKL 604
           I E   + S++  +  L + NNE+  IEE +++QN M+  + ++ +TN+K +  + + ++
Sbjct: 724 IKELSFTNSNLHRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNLKASQPMIHLRI 783

Query: 603 L 601
           L
Sbjct: 784 L 784


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 792 LYSPHISEYVQSKSHIPIVNSLPIVNNELIEEYNNMQNSMLPTVKD 655
           L  P    Y   KSH+P  N+ PI+  ++ + Y+NM +S  P   D
Sbjct: 656 LQLPQPFYYEHHKSHVPFANNEPIL-LDIPQNYDNM-SSFKPLAHD 699


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
 Frame = -3

Query: 492 LDSRDMEIKIIRPMKDISEEELKLYINSKNLKVNDKQTSKENEHTS---LQTVISTFVSS 322
           L+  ++EI+++R       E+L+   + K+  ++  + S +   T+       +S + + 
Sbjct: 326 LEFYEIEIEVLRE----KVEKLQALSDEKDFYISKLEKSLDRNDTTPVPSDEKLSNYAAE 381

Query: 321 LQENFPSTISTICKTADKIGLQDECDNER 235
            +EN  S IS +  T +++ + +E DNER
Sbjct: 382 -KENLVSRISELEHTIEQLTINNERDNER 409


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 438 EEELKLYINSKNLKVNDKQTSKENEHTSLQTVIST 334
           EEE+ +   SK +  +     KE  HT  Q  I T
Sbjct: 404 EEEISVVSKSKEISSSVSSVGKEQNHTEKQVAIET 438


>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 95  MLLTQQYFLIFIIVYVMLAVEI 30
           M  T  + L+FI+++ +LAV++
Sbjct: 69  MFFTSSFMLLFIVIFTLLAVDL 90


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 192 HQVSRCFDK*HTYYAFHCHIHLVIQFYQQFYIL--LKLWKENFLANC 326
           H++S+        +AF   + LV+   Q F++   +  WK  F++ C
Sbjct: 391 HRISKTNKSIEGVFAFSISVFLVLHLTQAFHVCPSVTFWKTLFMSLC 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,444
Number of Sequences: 5004
Number of extensions: 65952
Number of successful extensions: 224
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)