Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11d01
(842 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73974-1|CAA98270.2| 349|Caenorhabditis elegans Hypothetical pr... 51 1e-06
AF040654-2|AAK21449.2| 1014|Caenorhabditis elegans Hypothetical ... 36 0.036
Z73102-7|CAA97420.1| 727|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z34802-3|CAA84333.1| 354|Caenorhabditis elegans Hypothetical pr... 29 3.1
AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical ... 29 3.1
Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z68303-12|CAA92644.2| 969|Caenorhabditis elegans Hypothetical p... 29 4.1
Z68303-1|CAC42387.1| 475|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z68302-9|CAA92636.2| 969|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z48585-3|CAA88485.1| 322|Caenorhabditis elegans Hypothetical pr... 29 4.1
U29488-1|AAA68773.2| 338|Caenorhabditis elegans Serpentine rece... 29 4.1
U41263-6|AAC24432.1| 338|Caenorhabditis elegans Serpentine rece... 29 5.5
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 29 5.5
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 5.5
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 5.5
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 29 5.5
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 29 5.5
Z81550-7|CAH60764.1| 581|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z70211-6|CAH60769.1| 581|Caenorhabditis elegans Hypothetical pr... 28 7.2
U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine r... 28 7.2
U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine r... 28 7.2
AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine... 28 7.2
Z72508-1|CAA96641.1| 342|Caenorhabditis elegans Hypothetical pr... 28 9.5
U80843-8|AAB37963.1| 250|Caenorhabditis elegans Hypothetical pr... 28 9.5
>Z73974-1|CAA98270.2| 349|Caenorhabditis elegans Hypothetical
protein F29F11.3 protein.
Length = 349
Score = 50.8 bits (116), Expect = 1e-06
Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Frame = -3
Query: 531 IGRGSQVQSDVGFLDSRDMEIKIIRPMKDISEEELKLYINSKNLKVNDKQTSKE-NEHTS 355
+GRG + + V D R + +IRP+ DIS++EL +Y ++ + +++ N+ S
Sbjct: 218 LGRGGSISTLVTVTDKRP-DFMLIRPLCDISKKELAVYNYLCDIDKHCIHIAQQNNQQKS 276
Query: 354 LQTVISTFVSSLQ-ENFPSTISTICKTADKI 265
+QT+ F+ +L+ E F STI+T+ TA KI
Sbjct: 277 VQTLTDAFICTLENEKFYSTINTVLSTAAKI 307
>AF040654-2|AAK21449.2| 1014|Caenorhabditis elegans Hypothetical
protein R06B10.2 protein.
Length = 1014
Score = 35.9 bits (79), Expect = 0.036
Identities = 17/73 (23%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = -3
Query: 531 IGRGSQVQSDVGFLDSRDMEIKIIRPMKDISEEELKLY-INSKNLKVNDKQTSKENEHTS 355
+G ++ +++ + S+ +++KI++ +K + +EE+K + +N ++K + E+E
Sbjct: 546 VGMATRGITNMQMMSSQTVDLKIVKELKAVIDEEMKKHQLNPSDVKNLNSLDGLEDELNR 605
Query: 354 LQTVISTFVSSLQ 316
++T IS F S++
Sbjct: 606 IKTAISDFKKSVK 618
>Z73102-7|CAA97420.1| 727|Caenorhabditis elegans Hypothetical
protein B0035.6 protein.
Length = 727
Score = 29.9 bits (64), Expect = 2.4
Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 4/168 (2%)
Frame = -3
Query: 492 LDSRDMEIKII-RPMKDISEEELKLYINSKNLKVNDKQTSKENEHTSLQTVISTFVSSLQ 316
+++ M +K I + M+ + E K Y+ SK LK E T L+ IST+ +L+
Sbjct: 337 IENCKMILKAIGQNMEQPFDAEAKSYLTSKVLK--------EFPWT-LEFAISTWFKALE 387
Query: 315 ENFPSTISTICKT--ADKIGLQDECDNERHNMCVICQSILKPDEKAISALDA-TSISKIV 145
S + K A+ DE + + QSI + DE+ S L + +S+ +
Sbjct: 388 VEKRRIPSAVYKAINAEMKETFDERTFDIEESETVDQSINEEDEERCSTLSSESSVKTAI 447
Query: 144 SLRKHTDSAIDVDMEKNVINSTIFPYIHNRLCYACSRNYAEIKQSKIP 1
S+ +D+A+D ++E N ++ + P +C + + +IP
Sbjct: 448 SIDHKSDTAVD-NLEMNQLHLSPKPKASVEAVKSCKPAFVAVIFEEIP 494
>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical
protein ZK512.3 protein.
Length = 1418
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -3
Query: 471 IKIIRPMKDISEEELKLYINSKNLKVNDKQTSKENEHTSLQTVISTFVSSLQENFPSTIS 292
+K + P + E L + +NS ++ +D SK TSL T++ +++ + S
Sbjct: 121 LKNVLPQLEHQAEVLHILVNSDDMIASDTTNSKSVVDTSLNTLLLICRKEPNDSYETVAS 180
Query: 291 TICK 280
+I K
Sbjct: 181 SIAK 184
>Z34802-3|CAA84333.1| 354|Caenorhabditis elegans Hypothetical
protein M88.3 protein.
Length = 354
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Frame = -3
Query: 414 NSKNLKVNDKQTSKENEHTSLQTVISTFVSSLQENFPSTISTIC----KTADKIGLQDEC 247
+ K LK+ K S+ SL T+ ST V + P ++ IC K A L +
Sbjct: 75 DDKYLKILQKSISRSTSIGSLNTIKSTTVV---HDVPPPVTAICDGPCKKAFPSNLLNTI 131
Query: 246 DNERHNMCVICQSILK 199
H +C C ILK
Sbjct: 132 GRCGHYLCTACYGILK 147
>AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical
protein Y92H12A.5 protein.
Length = 1375
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Frame = -3
Query: 381 TSKENEHTSLQTVISTFVSSLQENFPSTISTICKTADKIGLQDECDNERHNMCVIC--QS 208
++K N + + ++ V +ENF + C DK+ L+ ++RHN+ + C S
Sbjct: 457 STKGNYYRRIMGLMQIDVLFSRENF--IVDGKCFFVDKLNLESTLGSDRHNLVIDCLDDS 514
Query: 207 ILKPDEKAISALDATSISKI-VSLRKHTDSAIDVDMEKNVINST 79
A+ L I + +K+ + A+D+ N+T
Sbjct: 515 YDMVQSTALGLLKKLDFGNIKLDEKKYLNDAVDLMTSTRSRNAT 558
>Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical
protein F53B2.5 protein.
Length = 447
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 492 LDSRDMEIKIIRPMKDISEEELKLYINSKNLKVNDKQTSKENEHTSLQTV 343
+DS + II M IS+E L++NS L + K +N S QTV
Sbjct: 55 IDSEVNAVWIITNMCCISQEVTHLFVNSNCLDILIKLVRSQNARLSSQTV 104
>Z68303-12|CAA92644.2| 969|Caenorhabditis elegans Hypothetical
protein ZK792.1a protein.
Length = 969
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -3
Query: 519 SQVQSDVGFLDSRDMEIKIIRPMKDISE-EELKLYI 415
S+V+ D+G L SRD++ K K+++E +E+K ++
Sbjct: 105 SKVEDDIGCLASRDVDRKAFVAYKELAESDEIKAFL 140
>Z68303-1|CAC42387.1| 475|Caenorhabditis elegans Hypothetical
protein ZK792.1b protein.
Length = 475
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -3
Query: 519 SQVQSDVGFLDSRDMEIKIIRPMKDISE-EELKLYI 415
S+V+ D+G L SRD++ K K+++E +E+K ++
Sbjct: 105 SKVEDDIGCLASRDVDRKAFVAYKELAESDEIKAFL 140
>Z68302-9|CAA92636.2| 969|Caenorhabditis elegans Hypothetical
protein ZK792.1a protein.
Length = 969
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -3
Query: 519 SQVQSDVGFLDSRDMEIKIIRPMKDISE-EELKLYI 415
S+V+ D+G L SRD++ K K+++E +E+K ++
Sbjct: 105 SKVEDDIGCLASRDVDRKAFVAYKELAESDEIKAFL 140
>Z48585-3|CAA88485.1| 322|Caenorhabditis elegans Hypothetical
protein ZK673.3 protein.
Length = 322
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Frame = -3
Query: 492 LDSRDMEIKIIRPMKDISEEELKLYINSKNLKVNDKQT---SKENEHTSLQTVISTFVSS 322
+DS ++EIK+ P ++ +E+ K N +K+ +T K S +I +
Sbjct: 210 MDSENVEIKMESPQEEAAEKS-KFSENLVEVKLEPIETHELDKTISDFSSSDIIDSSQKL 268
Query: 321 LQENFPSTISTICKTADKIGLQDECDNERH 232
Q FP + + K ++K L+DE ++++
Sbjct: 269 QQNGFPEKVEQMDKYSNK--LKDEASDKKY 296
>U29488-1|AAA68773.2| 338|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 31 protein.
Length = 338
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 240 HCHIHLVI--QFYQQFYILLKLWKENFLANCLQKY*LLFAS 356
HC I L+I + + + KLWK N NC + LLF++
Sbjct: 25 HCFILLIIISSVFLTVFAIRKLWKNNIFPNCTRT--LLFSA 63
>U41263-6|AAC24432.1| 338|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 26 protein.
Length = 338
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 237 FHCHIHLVIQFYQQFYILLK-LWKENFLANCLQKY*LLFAS 356
F C I ++I Y FY+++K L K N +NC + L+F S
Sbjct: 31 FVCIISIIIISYYFFYLVVKTLIKNNIFSNCTRAL-LIFCS 70
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 28.7 bits (61), Expect = 5.5
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Frame = -3
Query: 456 PMKDISEEELKLYINSKNLKVNDKQTSK-ENEHTSLQTVISTFVSSLQENFPSTISTICK 280
P K +S + +++ N+ ++ N K +K + E +L+ + T + E I
Sbjct: 1942 PQK-LSYKGQEIFANTNTVERNSKAGAKAKGEVENLKKCVETLLLFDAEMDMKDIKESSP 2000
Query: 279 TADKIGLQDECDNERHNMCVICQSILKPDEKAISALDATSISKIVSLRKHTDSAIDVD 106
+ I +D+ + + Q ILK E+ ++ ++ TS K +S K T + DV+
Sbjct: 2001 KKEIISKKDQ--QSLDDQIKVTQQILKDVERDLNKMERTSPGKSLSPNKRTFAPKDVE 2056
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 5.5
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Frame = -3
Query: 456 PMKDISEEELKLYINSKNLKVNDKQTSK-ENEHTSLQTVISTFVSSLQENFPSTISTICK 280
P K +S + +++ N+ ++ N K +K + E +L+ + T + E I
Sbjct: 1942 PQK-LSYKGQEIFANTNTVERNSKAGAKAKGEVENLKKCVETLLLFDAEMDMKDIKESSP 2000
Query: 279 TADKIGLQDECDNERHNMCVICQSILKPDEKAISALDATSISKIVSLRKHTDSAIDVD 106
+ I +D+ + + Q ILK E+ ++ ++ TS K +S K T + DV+
Sbjct: 2001 KKEIISKKDQ--QSLDDQIKVTQQILKDVERDLNKMERTSPGKSLSPNKRTFAPKDVE 2056
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 5.5
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Frame = -3
Query: 456 PMKDISEEELKLYINSKNLKVNDKQTSK-ENEHTSLQTVISTFVSSLQENFPSTISTICK 280
P K +S + +++ N+ ++ N K +K + E +L+ + T + E I
Sbjct: 1942 PQK-LSYKGQEIFANTNTVERNSKAGAKAKGEVENLKKCVETLLLFDAEMDMKDIKESSP 2000
Query: 279 TADKIGLQDECDNERHNMCVICQSILKPDEKAISALDATSISKIVSLRKHTDSAIDVD 106
+ I +D+ + + Q ILK E+ ++ ++ TS K +S K T + DV+
Sbjct: 2001 KKEIISKKDQ--QSLDDQIKVTQQILKDVERDLNKMERTSPGKSLSPNKRTFAPKDVE 2056
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = -3
Query: 432 ELKLYINSKNLKVNDKQTSKENEHTSLQTVISTFVSSLQENFPSTISTICKTADKIGLQD 253
E++ IN KN+ NDK+ + T +V L+E++ T+ TI DKIG +
Sbjct: 470 EIEQIINYKNMPKNDKRQTMMFSATFPSSVQEAARKLLREDY--TMITI----DKIGAAN 523
Query: 252 ECDNERHNMC 223
+C + +C
Sbjct: 524 KCVIQEFELC 533
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = -3
Query: 432 ELKLYINSKNLKVNDKQTSKENEHTSLQTVISTFVSSLQENFPSTISTICKTADKIGLQD 253
E++ IN KN+ NDK+ + T +V L+E++ T+ TI DKIG +
Sbjct: 470 EIEQIINYKNMPKNDKRQTMMFSATFPSSVQEAARKLLREDY--TMITI----DKIGAAN 523
Query: 252 ECDNERHNMC 223
+C + +C
Sbjct: 524 KCVIQEFELC 533
>Z81550-7|CAH60764.1| 581|Caenorhabditis elegans Hypothetical
protein K11E4.5b protein.
Length = 581
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 169 CNKYFQNSFIEKTYRLCYRCGHGEKC 92
CN +F+ + +EK YRC H C
Sbjct: 30 CNAFFRRTVVEKALFQEYRCKHTNTC 55
>Z70211-6|CAH60769.1| 581|Caenorhabditis elegans Hypothetical
protein K11E4.5b protein.
Length = 581
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 169 CNKYFQNSFIEKTYRLCYRCGHGEKC 92
CN +F+ + +EK YRC H C
Sbjct: 30 CNAFFRRTVVEKALFQEYRCKHTNTC 55
>U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform a protein.
Length = 446
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = -3
Query: 456 PMKDISEEELKLYINSK-NLKVNDKQTSKENEHTS----LQTVISTFVSSLQ-ENFP 304
P + I + +L +Y N+ N+K N+ QT+ + EHT + +I+ LQ E FP
Sbjct: 102 PSEMIWKPDLLVYNNANMNIKENEMQTNVQIEHTGKISLFRAIITDITCDLQMEKFP 158
>U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform b protein.
Length = 515
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = -3
Query: 456 PMKDISEEELKLYINSK-NLKVNDKQTSKENEHTS----LQTVISTFVSSLQ-ENFP 304
P + I + +L +Y N+ N+K N+ QT+ + EHT + +I+ LQ E FP
Sbjct: 102 PSEMIWKPDLLVYNNANMNIKENEMQTNVQIEHTGKISLFRAIITDITCDLQMEKFP 158
>AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine
receptor, nicotinic,alpha 9 like (58.1 kD) alternative
variant a protein.
Length = 499
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = -3
Query: 456 PMKDISEEELKLYINSK-NLKVNDKQTSKENEHTS----LQTVISTFVSSLQ-ENFP 304
P + I + +L +Y N+ N+K N+ QT+ + EHT + +I+ LQ E FP
Sbjct: 86 PSEMIWKPDLLVYNNANMNIKENEMQTNVQIEHTGKISLFRAIITDITCDLQMEKFP 142
>Z72508-1|CAA96641.1| 342|Caenorhabditis elegans Hypothetical
protein F28H7.1 protein.
Length = 342
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 673 HAILHVIVLFYKFIVYNR*RIHNWYMRFGL 762
+A+LH L+ F+++N + W+M +GL
Sbjct: 103 YAVLHSHFLYRFFVLFNNQFLTRWFMPYGL 132
>U80843-8|AAB37963.1| 250|Caenorhabditis elegans Hypothetical
protein C32B5.7 protein.
Length = 250
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 378 SKENEHTSLQTVISTFVSSLQENFPSTISTICKTADKIGL 259
SK + + SL+TV+ +L+E FP + + T + IGL
Sbjct: 3 SKPSSYQSLKTVLKHVDFNLREKFPEKPANLRNTRNYIGL 42
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,972,605
Number of Sequences: 27780
Number of extensions: 366964
Number of successful extensions: 1117
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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