Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11d01
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    27   0.22 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 450 KDISEEELKLYINSKNLKVNDK-QTSKENEHTSLQTVIS 337
           K ISE E  + I+   LK NDK Q  K+N  T  +  I+
Sbjct: 464 KQISELESNMQISPNELKPNDKSQVIKQNTWTVFRDAIT 502


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 16/71 (22%), Positives = 29/71 (40%)
 Frame = -3

Query: 219 ICQSILKPDEKAISALDATSISKIVSLRKHTDSAIDVDMEKNVINSTIFPYIHNRLCYAC 40
           I   I+ P E+    ++    S    L+K+T S     + K   ++   P+ H  L +  
Sbjct: 214 IKNGIVSPQEERPKGINGRRASLFCGLQKYTRSFAHQSINKEARSNLYLPF-HLTLSFRD 272

Query: 39  SRNYAEIKQSK 7
            R+    +Q K
Sbjct: 273 FRDRTTEQQHK 283


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 16/71 (22%), Positives = 29/71 (40%)
 Frame = -3

Query: 219 ICQSILKPDEKAISALDATSISKIVSLRKHTDSAIDVDMEKNVINSTIFPYIHNRLCYAC 40
           I   I+ P E+    ++    S    L+K+T S     + K   ++   P+ H  L +  
Sbjct: 209 IKNGIVSPQEERPKGINGRRASLFCGLQKYTRSFAHQSINKEARSNLYLPF-HLTLSFRD 267

Query: 39  SRNYAEIKQSK 7
            R+    +Q K
Sbjct: 268 FRDRTTEQQHK 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,537
Number of Sequences: 438
Number of extensions: 4724
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)