Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c24
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    27   3.0  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   3.9  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   6.9  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    26   6.9  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   9.1  
SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||...    25   9.1  

>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 87  KYFFLTFIG-FHLSYKSMFTIHTDTYSFINIKNNNFYYT 200
           KY +L F   F +   + +T +T+ + F NI+NN   YT
Sbjct: 482 KYLYLLFEDDFSILPLTNYTFNTEAHPFPNIENNMDLYT 520


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 72  SIFKTKYFFLTFIGFHLSYKSMFTIHTDTYSFINIKNNNFYYTALPF*TS 221
           SI +    F    G   SY+ M    + TY F+N K   FYY    F T+
Sbjct: 177 SIHQVMILFSDLGGTPYSYRFMDGFSSHTYKFVNDK-GEFYYCKWHFITN 225


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 710 HHIENLSELNSNVSEMYCFNLTFTVYTVHTE 618
           H+I +  ELNS   E  C+  T  V  V+TE
Sbjct: 594 HYIRDNIELNSKEREHDCYEGTLAVPQVNTE 624


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 339 CLCENAKGIKKCVRIKCTFNVLYFEPHCMFSKY 241
           C CEN+ G+  C RI      + +EP   ++ Y
Sbjct: 192 CYCENSTGMSTCPRI---LEFMPYEPLLKYNSY 221


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 39  YIVLAYFFLDISIFKTKYFFLTF 107
           Y++L YFFLDIS  K +   LTF
Sbjct: 347 YLILYYFFLDIS--KLQMTSLTF 367


>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 3   MILPPKLDTNNWYIVLAYFFLDISIFKTKYFFLTFIGFHLSYK 131
           +++  K   N  Y V   FF DI + K+KY       F + YK
Sbjct: 47  LVIDSKSGANAHYAVQIDFFKDIDVEKSKYSVTGRYIFFVLYK 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,142,612
Number of Sequences: 5004
Number of extensions: 66635
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)