Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c24
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.59 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.59 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.59 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.59 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.3  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           21   9.6  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   9.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 271 IKNIKGTFNAYAFFNPFCILAQAF*SYSQTIICF 372
           I + +G  N + F +P C  A    SY QT I +
Sbjct: 183 ILSCQGRLNIFPFDDPLCSFAIESISYEQTAITY 216


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 271 IKNIKGTFNAYAFFNPFCILAQAF*SYSQTIICF 372
           I + +G  N + F +P C  A    SY QT I +
Sbjct: 183 ILSCQGRLNIFPFDDPLCSFAIESISYEQTAITY 216


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 271 IKNIKGTFNAYAFFNPFCILAQAF*SYSQTIICF 372
           I + +G  N + F +P C  A    SY QT I +
Sbjct: 234 ILSCQGRLNIFPFDDPLCSFAIESISYEQTAITY 267


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 271 IKNIKGTFNAYAFFNPFCILAQAF*SYSQTIICF 372
           I + +G  N + F +P C  A    SY QT I +
Sbjct: 183 ILSCQGRLNIFPFDDPLCSFAIESISYEQTAITY 216


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 123 SYKSMFTIHTDTYSFINIKNNNFYYT 200
           +YK  F   TD   +I I+    +YT
Sbjct: 212 TYKGDFPTETDITFYIIIRRKTLFYT 237


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -3

Query: 198 CNKNCYFLCL*KNRCLYEW*TWIY 127
           C+ +  F    + RC+ +W +W Y
Sbjct: 131 CDIDVEFFPFDEQRCVLKWASWTY 154


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 14/61 (22%), Positives = 25/61 (40%)
 Frame = +3

Query: 12  PPKLDTNNWYIVLAYFFLDISIFKTKYFFLTFIGFHLSYKSMFTIHTDTYSFINIKNNNF 191
           PP +  ++  I + YF  D      K+   T+ GF +  + +  I       I +  + F
Sbjct: 141 PPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDEIRGKNVVDIGVDLSEF 200

Query: 192 Y 194
           Y
Sbjct: 201 Y 201


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 635 YTVHTENVYVTVLMMVARLKI 573
           YT HT+   VT + +V  LKI
Sbjct: 73  YTEHTKRKTVTAMDVVYALKI 93


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +3

Query: 120 LSYKSMFTIHTDTYSFINIKNNNFYYTALPF 212
           L +K +   + +T+S +  K +N  +  +PF
Sbjct: 216 LLFKELQAAYEETFSLVFTKIDNEIFNRVPF 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,522
Number of Sequences: 438
Number of extensions: 4592
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)