Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c23
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    27   2.2  
SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   5.2  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    26   6.8  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    25   9.0  

>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 425 LHFKNHVNNKRLIFKMGHHLYIFTLKCKLTTFRISSNATSVDL 553
           LH+ N   N     K+ H LY  T K ++T  ++ SN + V++
Sbjct: 360 LHYYNRFANHEQSAKLDHELYEHTHK-RMTQMQVDSNLSWVEV 401


>SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 242

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +3

Query: 519 LEFPVMRPRSISWRHTIEENGSKSFQFLTVP 611
           +E P ++P   SW   +++N  + +  L+ P
Sbjct: 103 VEMPKLKPVPTSWEQALQDNKPEEYYHLSAP 133


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 647 QNYGHQHIMH-P*RYC*KLKTFRSVFFYCMSPRDR 546
           +NYG  +IMH P R   KLK F S +      +D+
Sbjct: 496 ENYGGDYIMHPPFRSPVKLKRFMSAYMLLYLRKDK 530


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 661 NSFSINRFIYL*WLWQLKRI 720
           N + + +F+Y  W WQ K+I
Sbjct: 668 NRYDLRQFLYPSWTWQNKKI 687


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,275
Number of Sequences: 5004
Number of extensions: 55546
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)