Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c23
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   5.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -2

Query: 143 FPVSR--VRIKYGSYRWKTKGLVFLTK 69
           +P+ R    ++  SY W T  LVFL K
Sbjct: 167 YPLDRQVCSLRMASYGWTTDDLVFLWK 193


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -2

Query: 143 FPVSR--VRIKYGSYRWKTKGLVFLTK 69
           +P+ R    ++  SY W T  LVFL K
Sbjct: 167 YPLDRQVCSLRMASYGWTTDDLVFLWK 193


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 558 RHTIEENGSKSFQFLTVPLGMHNMLM 635
           R  + E+GS++F++ + P G    L+
Sbjct: 578 RLVVSEDGSETFKYSSQPYGFPERLL 603


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 558 RHTIEENGSKSFQFLTVPLGMHNMLM 635
           R  + E+GS++F++ + P G    L+
Sbjct: 578 RLVVSEDGSETFKYSSQPYGFPERLL 603


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 531 VMRPRSISWRHTIEENGSKSFQ 596
           V +PR + WR TI    +  F+
Sbjct: 394 VTKPRYMVWRETISSTATLGFR 415


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 531 VMRPRSISWRHTIEENGSKSFQ 596
           V +PR + WR TI    +  F+
Sbjct: 309 VTKPRYMVWRETISSTATLGFR 330


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 531 VMRPRSISWRHTIEENGSKSFQ 596
           V +PR + WR TI    +  F+
Sbjct: 628 VTKPRYMVWRETISSTATLGFR 649


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 557 PRDRPRSHYWK 525
           PRD PRSH +K
Sbjct: 65  PRDFPRSHRFK 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,437
Number of Sequences: 438
Number of extensions: 3608
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)