Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c22
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0502 - 16604289-16605374,16605546-16605716,16607044-16607337     30   1.2  
05_01_0472 + 3772633-3773145                                           29   2.1  
02_02_0520 + 11152718-11153600,11153736-11153917,11154160-111542...    27   6.3  
12_01_0824 + 7601811-7602598,7603690-7605730,7605762-7605767,760...    27   8.3  
09_03_0160 - 12915283-12915453,12915546-12915713,12915944-129159...    27   8.3  
01_06_1842 - 40278875-40280131                                         27   8.3  

>04_03_0502 - 16604289-16605374,16605546-16605716,16607044-16607337
          Length = 516

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -2

Query: 168 TAPEFSPKTRDLVTNVPEKHIENVFEKLTNNDLQNLDGAPIKNVVLSFKR 19
           T PE   + +D VTN  EK  + +F K+T++         IK++ L  KR
Sbjct: 205 TLPEIENQEQDHVTNSEEKTFDEIFVKITSSANSGGRKQAIKDLRLLTKR 254


>05_01_0472 + 3772633-3773145
          Length = 170

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 133 SNKRSRKTHRKRIRKAYKQRSSESRWRPHKKCCV 32
           S KRS   HR+R+       S  + WRPH +C V
Sbjct: 138 SEKRSSSLHRRRMSAG----SRTAAWRPHLECIV 167


>02_02_0520 +
           11152718-11153600,11153736-11153917,11154160-11154249,
           11154343-11154627,11154776-11154994,11155112-11155339
          Length = 628

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 288 ATGPD--PRPVQNQTSAIKSVSNARANVPAPWTQLVAWGLLATAPEFSP 148
           A GP   PRP+Q+Q + +       ANVPA  T+     L+     F+P
Sbjct: 101 AIGPSNPPRPLQDQEAYVWPWMGILANVPAEKTKEDGASLMQQLANFNP 149


>12_01_0824 +
           7601811-7602598,7603690-7605730,7605762-7605767,
           7606142-7606291
          Length = 994

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 256 VLDRAGVGACGDAHCMLAQIYMVLSCL*SVQNTCSCYVSVSQRPQVFR 399
           V+   G G  G    + +Q+Y  +     VQ  C  +VSVSQ+P + R
Sbjct: 187 VMSIVGFGGLGKT-TLASQVYREVG----VQFNCKAFVSVSQKPDMVR 229


>09_03_0160 -
           12915283-12915453,12915546-12915713,12915944-12915957,
           12916051-12916153,12917359-12917445,12917741-12918013
          Length = 271

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -2

Query: 195 QLVAWGLLATAPEFS----PKTRDLVTNVPEKHIENVFEKLTNNDLQNLDGAP 49
           QL+A   L+ A +      P   DL  +   KHI N   +  N+D+Q LD  P
Sbjct: 128 QLLAVACLSLAAKMEETLVPSLLDLQASRVLKHISNAMVQNANSDIQFLDHCP 180


>01_06_1842 - 40278875-40280131
          Length = 418

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
 Frame = -2

Query: 300 AVCIATGPDPRPVQNQTSAIKSVSNAR----ANVPAP---WTQLVAWGLLATAPEFSPKT 142
           A   AT P P P +  +SA  S SN+R    A  P P        A    ATAP  +P T
Sbjct: 226 APAAATAPGPAPARKVSSAPCSRSNSRGETSAAAPPPSIATAACAAAAAAATAPAPAPAT 285

Query: 141 RDLVTNVP 118
             L   VP
Sbjct: 286 SMLRRLVP 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,936,026
Number of Sequences: 37544
Number of extensions: 269699
Number of successful extensions: 794
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)