Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c22
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81040-3|CAB02783.3|  444|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical p...    29   1.4  
Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U32305-11|AAL50323.1|  663|Caenorhabditis elegans Splicing facto...    29   2.4  
U32305-10|AAM75378.1|  749|Caenorhabditis elegans Splicing facto...    29   2.4  
U32305-9|AAM75380.1|  751|Caenorhabditis elegans Splicing factor...    29   2.4  
U06932-1|AAA64937.1|  749|Caenorhabditis elegans CeSWAP protein.       29   2.4  
U41007-8|AAA82270.1|  179|Caenorhabditis elegans Sr protein (spl...    28   3.2  
Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AC006665-2|AAF39904.1|  341|Caenorhabditis elegans Hypothetical ...    28   4.3  
Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z70210-6|CAA94152.1|  184|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AF056580-1|AAC78602.1|  184|Caenorhabditis elegans heterochromat...    27   7.5  
Z70035-6|CAA93866.1|  444|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z81040-3|CAB02783.3|  444|Caenorhabditis elegans Hypothetical
           protein C26E1.3 protein.
          Length = 444

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 10/42 (23%), Positives = 26/42 (61%)
 Frame = -2

Query: 171 ATAPEFSPKTRDLVTNVPEKHIENVFEKLTNNDLQNLDGAPI 46
           ++ P  +  +++  +++P  +  ++FE + NN+ + + GAPI
Sbjct: 67  SSTPSLATASQNFSSHLPASYSADLFENIENNEHKAISGAPI 108


>Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 160 RIQSKDSRLSNKRSRKTHRKRIRKAYKQRSSESR 59
           R +S+D +    RSR   RKR +K  + RS E R
Sbjct: 355 RSKSRDRKRERSRSRSKDRKRDKKRSRSRSPEKR 388


>Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 160 RIQSKDSRLSNKRSRKTHRKRIRKAYKQRSSESR 59
           R +S+D +    RSR   RKR +K  + RS E R
Sbjct: 355 RSKSRDRKRERSRSRSKDRKRDKKRSRSRSPEKR 388


>U32305-11|AAL50323.1|  663|Caenorhabditis elegans Splicing factor
           (suppressor ofwhite apricot) related protein 1, isoform
           b protein.
          Length = 663

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 139 RLSNKRSRKTHRKRIRKAYKQR--SSESRWRPHKK 41
           R    R RK HRKR R   + R  S   R R HKK
Sbjct: 597 RTDEDRERKRHRKRSRSRRRSRSCSPRDRSREHKK 631


>U32305-10|AAM75378.1|  749|Caenorhabditis elegans Splicing factor
           (suppressor ofwhite apricot) related protein 1, isoform
           a protein.
          Length = 749

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 139 RLSNKRSRKTHRKRIRKAYKQR--SSESRWRPHKK 41
           R    R RK HRKR R   + R  S   R R HKK
Sbjct: 683 RTDEDRERKRHRKRSRSRRRSRSCSPRDRSREHKK 717


>U32305-9|AAM75380.1|  751|Caenorhabditis elegans Splicing factor
           (suppressor ofwhite apricot) related protein 1, isoform
           d protein.
          Length = 751

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 139 RLSNKRSRKTHRKRIRKAYKQR--SSESRWRPHKK 41
           R    R RK HRKR R   + R  S   R R HKK
Sbjct: 685 RTDEDRERKRHRKRSRSRRRSRSCSPRDRSREHKK 719


>U06932-1|AAA64937.1|  749|Caenorhabditis elegans CeSWAP protein.
          Length = 749

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 139 RLSNKRSRKTHRKRIRKAYKQR--SSESRWRPHKK 41
           R    R RK HRKR R   + R  S   R R HKK
Sbjct: 683 RTDEDRERKRHRKRSRSRRRSRSCSPRDRSREHKK 717


>U41007-8|AAA82270.1|  179|Caenorhabditis elegans Sr protein
           (splicing factor) protein6, isoform a protein.
          Length = 179

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -1

Query: 169 DCARIQSKDSRLSNKRSRKTHRKRIRKAYKQRSSESRWRPHKK 41
           D +R +S+D   S  RSR+  R+R R   + RS + R R H K
Sbjct: 122 DRSRDRSRDR--SRDRSRERSRERERTRSRSRSPQERDRSHSK 162


>Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical
           protein F28C1.1 protein.
          Length = 672

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 163 ARIQSKDSRLSNKRSRKTHRKRIRKAYKQRSSESRWRPHK 44
           +R +S   R S  RSR   R+R R++  +R S SR R  +
Sbjct: 407 SRSRSPPRRRSRSRSRTRDRRRPRRSNSRRRSRSRDRQRR 446


>AC006665-2|AAF39904.1|  341|Caenorhabditis elegans Hypothetical
           protein H27M09.5 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 148 KDSRLSNKRSRKTHRKRIRKAYKQRSSESRWRPHKKCCVIL*KTSKKNI 2
           K  +  +K+S K+ R  ++   K+ +S    RP KK  +I  K SKKN+
Sbjct: 288 KPPKTLSKKSAKSTRNPLKSPSKRSNSV---RPEKKNKIISKKASKKNV 333


>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 324 NHVYLRQHAVCIATGPDPRPVQNQTSAI 241
           NH Y +QH     +   P+P+Q Q S+I
Sbjct: 737 NHQYQQQHPSLPRSASTPQPIQQQQSSI 764


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 324 NHVYLRQHAVCIATGPDPRPVQNQTSAI 241
           NH Y +QH     +   P+P+Q Q S+I
Sbjct: 737 NHQYQQQHPSLPRSASTPQPIQQQQSSI 764


>Z70210-6|CAA94152.1|  184|Caenorhabditis elegans Hypothetical
           protein K08H2.6 protein.
          Length = 184

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 465 ETIVTIHDLP*NLYLWCKILKSAEYLGPLRYANI 364
           +TI+ I   P  L+  CK    + +L PLR AN+
Sbjct: 123 KTIIGITKAPGELHFLCKFSDDSVHLIPLREANV 156


>AF056580-1|AAC78602.1|  184|Caenorhabditis elegans heterochromatin
           protein 1 homolog protein.
          Length = 184

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 465 ETIVTIHDLP*NLYLWCKILKSAEYLGPLRYANI 364
           +TI+ I   P  L+  CK    + +L PLR AN+
Sbjct: 123 KTIIGITKAPGELHFLCKFSDDSVHLIPLREANV 156


>Z70035-6|CAA93866.1|  444|Caenorhabditis elegans Hypothetical
          protein R09D1.6 protein.
          Length = 444

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 94 RKAYKQRSSESRWRPHKKCCVIL 26
          RK   Q  S+SRWRP+ K  +I+
Sbjct: 9  RKDSGQEPSQSRWRPYLKYIIIV 31


>AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical
           protein F09D1.1 protein.
          Length = 602

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 154 QSKDSRLSNKRSRKTHRKRIRKAYKQRS-SESRWRPHKK 41
           +S+D R + KR+    RKR R   + RS S  R R  KK
Sbjct: 28  RSRDDRKTEKRTHDRDRKRNRSRSRSRSRSPKRSRRDKK 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,371,539
Number of Sequences: 27780
Number of extensions: 238713
Number of successful extensions: 752
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)