Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c21
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subu...    27   4.6  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    27   4.6  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   8.1  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    26   8.1  

>SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subunit
           Rpc25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 739 LLSRAPPLIVVHPSLFLLWKPRNTAPAK 822
           LLSR   +I +HPS F  WKP   A A+
Sbjct: 3   LLSRFSDIISIHPSNF--WKPTKEALAE 28


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 535 KYNWFSSIDYSCSKSAKRSSKVEETSCSQM 624
           KY+W +S+D S ++S    S +  TS S+M
Sbjct: 170 KYHWETSLDESDAESISSGSLMSITSISEM 199


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +1

Query: 199 AERKCIFRFCSDIF--KAAPLQFY 264
           +E +C F +CS IF  +A  LQFY
Sbjct: 765 SEMECYFSYCSLIFYYQATTLQFY 788


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 759 RRCPRQ*WLYTMGKRTTRRWRQGTLRLNVLQWTVKR 652
           +R PR  W   +G+    RW  G    +   W V+R
Sbjct: 287 KRTPRALWYMMLGRINPNRWGSGEGPFDRHDWYVQR 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,573,347
Number of Sequences: 5004
Number of extensions: 77258
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)