Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c21
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0630 - 5203802-5204111,5204896-5204900                           29   3.7  
09_06_0309 - 22206812-22206884,22207008-22207103,22207531-222076...    29   4.9  
12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613     28   8.5  

>12_01_0630 - 5203802-5204111,5204896-5204900
          Length = 104

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 726 MGKRTTRRWRQGTLRLNVLQWTVKRYK 646
           MG R  RRWR GTLR    +   +RY+
Sbjct: 1   MGTRVRRRWRDGTLRPPSCRAISRRYR 27


>09_06_0309 -
           22206812-22206884,22207008-22207103,22207531-22207619,
           22207738-22207820,22207932-22208048,22208132-22208319,
           22208430-22208500,22208570-22208782,22210022-22210081,
           22210186-22210476,22210590-22211894
          Length = 861

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -2

Query: 794 HNKNKDGWTTIKGGALDNSGYTQWGNGQPDGGDKELCGS--MFYNGQL 657
           HN  KD W  +  GA   +G  +W    P+   KE+  S  + Y G+L
Sbjct: 237 HN-GKDYWCVVTTGAATTAGEGKWSRWWPEEPGKEIQSSHLLEYRGEL 283


>12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613
          Length = 787

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 640 VQLISFNCPL*NIEPQSSLSPPSGCPFPHCV*PLLS 747
           V ++ F+ PL ++ P + + PP G P  H   PLL+
Sbjct: 510 VNVLRFDAPLPSLPPPAKMPPPPGAP-SHSRLPLLA 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,906,962
Number of Sequences: 37544
Number of extensions: 452428
Number of successful extensions: 978
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)