Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c21
         (876 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-331|AAF51313.1| 1292|Drosophila melanogaster CG15378-PA...    33   0.68 
AE013599-1309|AAF58644.2|  187|Drosophila melanogaster CG7763-PA...    31   2.1  
AE014297-1949|AAN13632.1|  197|Drosophila melanogaster CG31303-P...    29   6.4  

>AE014134-331|AAF51313.1| 1292|Drosophila melanogaster CG15378-PA
           protein.
          Length = 1292

 Score = 32.7 bits (71), Expect = 0.68
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 734 YTQWGNGQPDGGDKELCGSMFYNGQLNDISCTQTCLFICE 615
           + +W +G+P   D   C    YNG++ D  C  T  FIC+
Sbjct: 217 FLKWASGRPSQLDTLNC-VFLYNGEMYDYPCHYTFRFICQ 255


>AE013599-1309|AAF58644.2|  187|Drosophila melanogaster CG7763-PA
           protein.
          Length = 187

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -2

Query: 785 NKDGWTTIKGGALDNSGYTQWGNGQPDGGDKELCGSMFYNGQ--LNDISCTQTCLFICEH 612
           N+  + ++  G+  N  +  W +G+P   D E      +NG+  +ND SC     FICE 
Sbjct: 127 NESEFVSVTKGSKAN--FLSWADGEPTK-DGECVDIRTFNGKTTMNDNSCFANLYFICEK 183

Query: 611 DV 606
            +
Sbjct: 184 SI 185


>AE014297-1949|AAN13632.1|  197|Drosophila melanogaster CG31303-PA
           protein.
          Length = 197

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -3

Query: 778 MDGLRLKAVPSTIVAIHNGETDNQTVETRNFAAQCSTMD 662
           ++ L+LK  PS+    H+  + NQT +T + AA  +T+D
Sbjct: 109 VEQLKLKTFPSS--PAHSAASSNQTEQTNSIAASTATVD 145


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,526,018
Number of Sequences: 53049
Number of extensions: 802822
Number of successful extensions: 1603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4250176164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)