Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c21
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81545-1|CAB04446.1|  179|Caenorhabditis elegans Hypothetical pr...    32   0.47 
U00052-1|AAK95880.2|  308|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81517-4|CAB04211.1|  350|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U58752-8|AAB00670.1|  308|Caenorhabditis elegans C-type lectin p...    30   1.9  
Z81542-1|CAB04414.1|  379|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z78064-10|CAB01510.3|  299|Caenorhabditis elegans Hypothetical p...    29   4.4  
Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U58752-6|AAB00668.1|  308|Caenorhabditis elegans C-type lectin p...    28   7.6  
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z81545-1|CAB04446.1|  179|Caenorhabditis elegans Hypothetical
           protein F49H6.1 protein.
          Length = 179

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -2

Query: 785 NKDGWTTIKGGALDNSGYTQWGNGQPDGGD---KELCGSMFYNGQLNDISC 642
           N   WT   G A   +G+  W  GQPD G     E C ++ Y G L+D +C
Sbjct: 117 NSFSWTD--GSATGTAGFV-WNTGQPDNGGAMLNEPCVTVNYLGVLSDDAC 164


>U00052-1|AAK95880.2|  308|Caenorhabditis elegans Hypothetical
           protein K02F3.5 protein.
          Length = 308

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 734 YTQWGNGQPDGGD-KELCGSMFYNGQLNDISCTQTCLFICEHDV 606
           + +WG  QPD  +  E C  + ++GQ  D  C  T  F+C+  +
Sbjct: 265 FYKWGKKQPDNQEHNENCVEVDHSGQWTDKLCIITRPFVCKKKI 308


>Z81517-4|CAB04211.1|  350|Caenorhabditis elegans Hypothetical
           protein F28B1.4 protein.
          Length = 350

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 1   ISNQDALVAASENEDRCECFQVIYYREILI 90
           +S     +A   NE  CEC ++I YR+++I
Sbjct: 257 LSENSLYIALQSNEGACECPKIIPYRDVVI 286


>U58752-8|AAB00670.1|  308|Caenorhabditis elegans C-type lectin
           protein 52 protein.
          Length = 308

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 833 RGKYLAGAVFLGFHNKNKDGWTTIKGGALDNSGYTQWGNGQPDGGDKE 690
           + K   G VF+G   +N   W    G  +D   Y  WG+G+P+  +KE
Sbjct: 226 KDKDWTGDVFIGLVFQNSK-WQWTDGSVVD---YVNWGDGEPNNMNKE 269


>Z81542-1|CAB04414.1|  379|Caenorhabditis elegans Hypothetical
           protein F49A5.2 protein.
          Length = 379

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = -2

Query: 665 GQLNDISCTQTCLFICEHDVSSTFDERFADLEQE*SIEENQLYFHY*KRFQCFATVATFC 486
           G+    SC QT  FICE  + ST  +   D     +I  N  Y  Y   +   A   TFC
Sbjct: 220 GKWKSDSCNQTMSFICE--LPSTIHDDNCD-----NIYNNHCYLRYDLSY-TVAEAQTFC 271

Query: 485 NIR-RKMVILNSRN 447
             +   +V +NS N
Sbjct: 272 KTKCANLVSINSAN 285


>Z78064-10|CAB01510.3|  299|Caenorhabditis elegans Hypothetical
           protein F57B1.1 protein.
          Length = 299

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 373 FDNCYFWWFL*ELKKQVFKQNSLSPFLEFKITIFRLILQK 492
           F    F+WFL +L   VF  +SL+  +    T+F LI ++
Sbjct: 24  FKKMIFFWFLTQLTISVFIMSSLNFLINVPATLFALITKE 63


>Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical
           protein F49A5.4 protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -2

Query: 734 YTQWGNGQPDGGDKELCGSMFYNG----QLNDISCTQTCLFICE 615
           Y  + +G P   DK +C     NG    +    SCT+T  F+CE
Sbjct: 138 YNNFADGWPSNEDK-ICNYFMTNGTQAGKWASASCTETMSFVCE 180


>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical
           protein ZK1193.2 protein.
          Length = 1250

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
 Frame = -2

Query: 749 LDNSGYTQWGNGQPDGGDKELC------GSMFYNGQLNDISCTQTCLFICE-HDVSSTF 594
           L ++ YT W  GQP    K+ C      G   Y G + +  CT+   F+C+ H  S+ +
Sbjct: 335 LQDTQYTNWMPGQPVLDAKKSCVVDSNKGDKSYRGWMTE-DCTKKYYFVCQKHAYSADY 392


>U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical
           protein B0244.6 protein.
          Length = 982

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -3

Query: 181 TRSLTASLIRRQR-RTSFSILKFCTL*QKKG-KLIFLCNILPENIRTCLRFRK 29
           T S +AS ++R R R  +SI+  C +   +    +FL ++ P +I TC  F K
Sbjct: 464 TLSSSASSVKRVRNRLGWSIIAVCLIAAAQIIPYVFLLDVAPHDIETCKGFYK 516


>U58752-6|AAB00668.1|  308|Caenorhabditis elegans C-type lectin
           protein 51 protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 809 VFLGFHNKNKDGWTTIKGGALDNSGYTQWGNGQPDGGDKE 690
           VF+G   +N   W    G A++   +  WG+G+P+  DKE
Sbjct: 234 VFIGLVYQNSK-WQWTDGSAVN---FLNWGDGEPNNMDKE 269


>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical protein
            F28B4.3 protein.
          Length = 2229

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
 Frame = -2

Query: 788  KNKDG---WTTIKGGALD--NSGYTQWGNGQPDGGDKELCGSMFYNGQLNDIS---CTQT 633
            KN DG   W   +G   D  N   T W NG+P       C  ++++G+  D S    T T
Sbjct: 1246 KNSDGQFYWDRGQGINPDLLNQPITYWANGEPSNDPTRQC--VYFDGRSGDKSKVWTTDT 1303

Query: 632  CL----FICE 615
            C     FIC+
Sbjct: 1304 CATPRPFICQ 1313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,013,847
Number of Sequences: 27780
Number of extensions: 444123
Number of successful extensions: 1147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)