Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c20
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   184   1e-47
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    29   0.82 
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.4  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    28   1.4  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    27   3.3  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   3.3  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    27   4.4  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    27   4.4  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   5.8  
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   7.7  

>SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 704

 Score =  184 bits (448), Expect = 1e-47
 Identities = 95/171 (55%), Positives = 124/171 (72%), Gaps = 1/171 (0%)
 Frame = -1

Query: 780  EEDKVKFEGLCKVMKNILDNKVEKVVVSNRLVESPCCIVTAQYGWSANMERIMKAQALRD 601
            E+ + ++E   K +K IL +KVEKVVVSN++V SPC + T QYGWSANMERIMKAQALRD
Sbjct: 537  EKLEKEYEEFAKQLKTILGDKVEKVVVSNKIVGSPCLLTTGQYGWSANMERIMKAQALRD 596

Query: 600  TSTMGYMAAKKHLEINPDHSIVETLRQKAEAD-KNDKAVKDLVILLYETALLSSGFTLDE 424
            TS   YM+++K  EINP   I+  L++K E +   D++VKDL  +LYETALLSSGFTLD+
Sbjct: 597  TSMSAYMSSRKTFEINPKSPIIAELKKKVEENGAEDRSVKDLATILYETALLSSGFTLDD 656

Query: 423  PQVHASRIYRMIKLGLGIDEDEPIQVEEPASGDVPPLEGDADDASRMEEVD 271
            P  +A RI R+I LGL IDE+E   +EE ++  V   E +A+  S+MEEVD
Sbjct: 657  PSAYAQRINRLISLGLSIDEEEEAPIEEISTESV-AAENNAE--SKMEEVD 704


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 354 IQVEEPASGDVPPLEGDADDASRMEEVD 271
           IQ + P   D PP++ DAD+    EE D
Sbjct: 157 IQWDNPDFDDAPPVQPDADEEEEEEEAD 184


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 639 NMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQK 517
           N  R M +  L    +  ++A KK LE+N    IV TLRQ+
Sbjct: 117 NTIRSMSSVVLASALSNNFIAQKKALEMNIMPKIVNTLRQE 157


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
 Frame = +1

Query: 622 HDTFH--VGRPSILSSNNT-----ARRLHKSVRDNNFLNFVVQDVLHH 744
           H+TF   VG   +++S+NT       RL K + +  F NF+ +++LH+
Sbjct: 197 HETFSHPVGCLIVITSHNTNPMATVMRLFKEINNAPFPNFISKEILHY 244


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 777 EDKVKFEGLCKVMKNILDNKVEKVVV--SNRLVESPC 673
           EDKV   G+ ++++ +LD  +  VV      +VE PC
Sbjct: 725 EDKVSTRGIEQLLEGVLDQPITLVVTKKDGSVVEIPC 761


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
 Frame = +1

Query: 658 SSNNTARRLHKSVRD-----NNFLNFVVQDVLHH---LAQPFELHLIFLTF 786
           S+N  ARRLHK+ R+      N ++ +V D   H   L  PF    ++  F
Sbjct: 770 SANGAARRLHKAAREICLRCANAISMIVDDCRKHNVILTSPFIASGVYTAF 820


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/82 (19%), Positives = 39/82 (47%)
 Frame = -1

Query: 522 QKAEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVE 343
           Q AE +   +   ++ +L+     + + + +D   ++   + ++      I ED+  +VE
Sbjct: 22  QDAEENSQPELEDEVKLLISRQYEMGNIWNVDWSSMNLESLRKLTNAQNTIIEDKKRKVE 81

Query: 342 EPASGDVPPLEGDADDASRMEE 277
           +P SG+   L  + D+  + E+
Sbjct: 82  KPVSGNQFSLLSEEDEVDKKEK 103


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 310 LQWRHISRSRLFNLNRLIFINTKTQFDHSIDTGSMDL 420
           L+W  I RS   N+N    ++   Q  HS+DT S+D+
Sbjct: 272 LEWS-IQRSNDSNINCSTCLDVDCQHLHSLDTHSLDI 307


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -1

Query: 534  ETLRQKAEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDE 364
            E+ R+K E+DKN ++ K +     E+     G + D   V   R+YR    G+ +D+
Sbjct: 1281 ESNRRKLESDKNVQSNKYVNPFASESEFCRCGASADPYTVLFWRLYRNKPSGIKLDK 1337


>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 237

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 620 RLRLYVTHPQWDTWLRRSIWKSIL 549
           +L +Y +  QW+ W  R  WKSI+
Sbjct: 8   KLHIYASPEQWEKWSPR--WKSIV 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,885
Number of Sequences: 5004
Number of extensions: 65621
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)