Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c19
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1227| Best HMM Match : Aldose_epim (HMM E-Value=0)                  58   6e-09
SB_27596| Best HMM Match : VWA (HMM E-Value=0.036)                     31   1.4  
SB_36565| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)                29   3.2  
SB_42645| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_1227| Best HMM Match : Aldose_epim (HMM E-Value=0)
          Length = 326

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 27/67 (40%), Positives = 41/67 (61%)
 Frame = -3

Query: 682 FDFRVPRVLRTMLPRVAMGGYDINYCVTQGTAQDLTFHARALHPVTGRVMELYSNQPGLQ 503
           FDF  P+ +   + +   G YD  +C+ QG        AR +HP +GRV+++++NQPG+Q
Sbjct: 233 FDFTKPKAIGKDIDKTPPG-YDHCFCLNQGEGMK----ARVVHPESGRVLQIFTNQPGMQ 287

Query: 502 FYTGNLL 482
            YTGN L
Sbjct: 288 LYTGNFL 294



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 301 GKQGTFYKKHGLFCLMPQNYPDAVN 227
           GK G  Y KH    L  Q+YP+A+N
Sbjct: 299 GKGGLHYHKHDGLALEAQDYPNAIN 323


>SB_27596| Best HMM Match : VWA (HMM E-Value=0.036)
          Length = 206

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 680 RL*SAPCFEDNAASSSDGRL*YQLLRHTGNSAGFNF-SCQSPPSSNRKSYGVVQ 522
           R+  A C    A    + R+ Y ++ H+G S    F SC S P +NR+   V++
Sbjct: 73  RMMEAACLVMEAFHQYEDRIKYDIVGHSGESPEIPFVSCGSVPKNNRERLDVMK 126


>SB_36565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 680 RL*SAPCFEDNAASSSDGRL*YQLLRHTGNSAGFNF-SCQSPPSSNRKSYGVVQ 522
           R+  A C    A    + R+ Y ++ H+G S    F SC S P +NR+   V++
Sbjct: 364 RMMEAACLVMEAFHQYEDRIKYDIVGHSGESPEIPFVSCGSVPKNNRERLDVMK 417


>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
          Length = 739

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
 Frame = -3

Query: 313 VPLMGKQGTFYKKHGLFC---LMPQNYPDA---VNHTNFPNSVLNP 194
           V + G  GT Y  HGLF    L+P NYPDA    ++ +  N  LNP
Sbjct: 638 VMIEGPAGTPYD-HGLFAFDILLPANYPDAPPSFHYLSMCNGRLNP 682


>SB_42645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +2

Query: 581 ILRCSLCDAIIDIITAHRYSRQHCPQNTGHSKVEYSTTNHFLFTCYYSIVICSGVFICID 760
           IL  ++CD I  +         +   N G    + S T   +  C YS+ I + V  CI+
Sbjct: 51  ILNLAVCDIISSLFGTISVDNVNMQWNVGAGFCKVSYT---MVYCCYSVAIVTLVAACIE 107

Query: 761 RKY 769
           R Y
Sbjct: 108 RYY 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,231,607
Number of Sequences: 59808
Number of extensions: 464911
Number of successful extensions: 994
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)