Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11c19
(786 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC019263-1|AAH19263.1| 342|Homo sapiens galactose mutarotase (a... 70 8e-12
BC014916-1|AAH14916.1| 342|Homo sapiens galactose mutarotase (a... 70 8e-12
AY064385-1|AAL62476.1| 342|Homo sapiens BLOCK 25 protein. 70 8e-12
AC074366-1|AAX93101.1| 342|Homo sapiens unknown protein. 70 8e-12
U04520-2|AAC27816.1| 1685|Homo sapiens type IV collagen alpha 5 ... 32 2.0
U04520-1|AAF66217.2| 1691|Homo sapiens type IV collagen alpha 5 ... 32 2.0
M63473-1|AAA51558.1| 762|Homo sapiens alpha-5 type IV collagen ... 32 2.0
M58526-1|AAA99480.1| 1604|Homo sapiens alpha-5 type IV collagen ... 32 2.0
M31115-1|AAA52045.1| 772|Homo sapiens COL4A5 protein. 32 2.0
AL035425-1|CAB90289.2| 1685|Homo sapiens collagen type IV alpha ... 32 2.0
AL034369-4|CAA22267.2| 1685|Homo sapiens collagen type IV alpha ... 32 2.0
AL031622-1|CAI43038.1| 1685|Homo sapiens collagen type IV alpha ... 32 2.0
>BC019263-1|AAH19263.1| 342|Homo sapiens galactose mutarotase
(aldose 1-epimerase) protein.
Length = 342
Score = 70.1 bits (164), Expect = 8e-12
Identities = 39/98 (39%), Positives = 53/98 (54%)
Frame = -3
Query: 775 DHIFTINADKYTAADDDXXXXXXXXXXXXTIFDFRVPRVLRTMLPRVAMGGYDINYCVTQ 596
DH TI AD Y D+ T FD R P L L + G+D N+C+ +
Sbjct: 191 DHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCL-K 249
Query: 595 GTAQDLTFHARALHPVTGRVMELYSNQPGLQFYTGNLL 482
G+ ++ F AR H +GRV+E+Y+ QPG+QFYTGN L
Sbjct: 250 GS-KEKHFCARVHHAASGRVLEVYTTQPGVQFYTGNFL 286
Score = 62.1 bits (144), Expect = 2e-09
Identities = 27/52 (51%), Positives = 31/52 (59%)
Frame = -3
Query: 307 LMGKQGTFYKKHGLFCLMPQNYPDAVNHTNFPNSVLNPGEVYVHRIQYKFGI 152
L GK G Y KH FCL QN+PDAVN FP +L PGE Y H +KF +
Sbjct: 290 LKGKNGAVYPKHSGFCLETQNWPDAVNQPRFPPVLLRPGEEYDHTTWFKFSV 341
>BC014916-1|AAH14916.1| 342|Homo sapiens galactose mutarotase
(aldose 1-epimerase) protein.
Length = 342
Score = 70.1 bits (164), Expect = 8e-12
Identities = 39/98 (39%), Positives = 53/98 (54%)
Frame = -3
Query: 775 DHIFTINADKYTAADDDXXXXXXXXXXXXTIFDFRVPRVLRTMLPRVAMGGYDINYCVTQ 596
DH TI AD Y D+ T FD R P L L + G+D N+C+ +
Sbjct: 191 DHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCL-K 249
Query: 595 GTAQDLTFHARALHPVTGRVMELYSNQPGLQFYTGNLL 482
G+ ++ F AR H +GRV+E+Y+ QPG+QFYTGN L
Sbjct: 250 GS-KEKHFCARVHHAASGRVLEVYTTQPGVQFYTGNFL 286
Score = 62.1 bits (144), Expect = 2e-09
Identities = 27/52 (51%), Positives = 31/52 (59%)
Frame = -3
Query: 307 LMGKQGTFYKKHGLFCLMPQNYPDAVNHTNFPNSVLNPGEVYVHRIQYKFGI 152
L GK G Y KH FCL QN+PDAVN FP +L PGE Y H +KF +
Sbjct: 290 LKGKNGAVYPKHSGFCLETQNWPDAVNQPRFPPVLLRPGEEYDHTTWFKFSV 341
>AY064385-1|AAL62476.1| 342|Homo sapiens BLOCK 25 protein.
Length = 342
Score = 70.1 bits (164), Expect = 8e-12
Identities = 39/98 (39%), Positives = 53/98 (54%)
Frame = -3
Query: 775 DHIFTINADKYTAADDDXXXXXXXXXXXXTIFDFRVPRVLRTMLPRVAMGGYDINYCVTQ 596
DH TI AD Y D+ T FD R P L L + G+D N+C+ +
Sbjct: 191 DHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCL-K 249
Query: 595 GTAQDLTFHARALHPVTGRVMELYSNQPGLQFYTGNLL 482
G+ ++ F AR H +GRV+E+Y+ QPG+QFYTGN L
Sbjct: 250 GS-KEKHFCARVHHAASGRVLEVYTTQPGVQFYTGNFL 286
Score = 62.1 bits (144), Expect = 2e-09
Identities = 27/52 (51%), Positives = 31/52 (59%)
Frame = -3
Query: 307 LMGKQGTFYKKHGLFCLMPQNYPDAVNHTNFPNSVLNPGEVYVHRIQYKFGI 152
L GK G Y KH FCL QN+PDAVN FP +L PGE Y H +KF +
Sbjct: 290 LKGKNGAVYPKHSGFCLETQNWPDAVNQPRFPPVLLRPGEEYDHTTWFKFSV 341
>AC074366-1|AAX93101.1| 342|Homo sapiens unknown protein.
Length = 342
Score = 70.1 bits (164), Expect = 8e-12
Identities = 39/98 (39%), Positives = 53/98 (54%)
Frame = -3
Query: 775 DHIFTINADKYTAADDDXXXXXXXXXXXXTIFDFRVPRVLRTMLPRVAMGGYDINYCVTQ 596
DH TI AD Y D+ T FD R P L L + G+D N+C+ +
Sbjct: 191 DHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCL-K 249
Query: 595 GTAQDLTFHARALHPVTGRVMELYSNQPGLQFYTGNLL 482
G+ ++ F AR H +GRV+E+Y+ QPG+QFYTGN L
Sbjct: 250 GS-KEKHFCARVHHAASGRVLEVYTTQPGVQFYTGNFL 286
Score = 62.1 bits (144), Expect = 2e-09
Identities = 27/52 (51%), Positives = 31/52 (59%)
Frame = -3
Query: 307 LMGKQGTFYKKHGLFCLMPQNYPDAVNHTNFPNSVLNPGEVYVHRIQYKFGI 152
L GK G Y KH FCL QN+PDAVN FP +L PGE Y H +KF +
Sbjct: 290 LKGKNGAVYPKHSGFCLETQNWPDAVNQPRFPPVLLRPGEEYDHTTWFKFSV 341
>U04520-2|AAC27816.1| 1685|Homo sapiens type IV collagen alpha 5 chain
protein.
Length = 1685
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 554 MEGSGMKS*ILRCSLCDAIIDIITAHRYSRQ--HCPQNTGHSKVEYSTTNH 700
++G ++ I RC++C+A +I H + Q HCPQ + YS H
Sbjct: 1552 LKGQSIQPFISRCAVCEAPAVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMH 1602
>U04520-1|AAF66217.2| 1691|Homo sapiens type IV collagen alpha 5 chain
protein.
Length = 1691
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 554 MEGSGMKS*ILRCSLCDAIIDIITAHRYSRQ--HCPQNTGHSKVEYSTTNH 700
++G ++ I RC++C+A +I H + Q HCPQ + YS H
Sbjct: 1558 LKGQSIQPFISRCAVCEAPAVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMH 1608
>M63473-1|AAA51558.1| 762|Homo sapiens alpha-5 type IV collagen
protein.
Length = 762
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 554 MEGSGMKS*ILRCSLCDAIIDIITAHRYSRQ--HCPQNTGHSKVEYSTTNH 700
++G ++ I RC++C+A +I H + Q HCPQ + YS H
Sbjct: 629 LKGQSIQPFISRCAVCEAPAVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMH 679
>M58526-1|AAA99480.1| 1604|Homo sapiens alpha-5 type IV collagen
protein.
Length = 1604
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 554 MEGSGMKS*ILRCSLCDAIIDIITAHRYSRQ--HCPQNTGHSKVEYSTTNH 700
++G ++ I RC++C+A +I H + Q HCPQ + YS H
Sbjct: 1471 LKGQSIQPFISRCAVCEAPAVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMH 1521
>M31115-1|AAA52045.1| 772|Homo sapiens COL4A5 protein.
Length = 772
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 554 MEGSGMKS*ILRCSLCDAIIDIITAHRYSRQ--HCPQNTGHSKVEYSTTNH 700
++G ++ I RC++C+A +I H + Q HCPQ + YS H
Sbjct: 639 LKGQSIQPFISRCAVCEAPAVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMH 689
>AL035425-1|CAB90289.2| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 554 MEGSGMKS*ILRCSLCDAIIDIITAHRYSRQ--HCPQNTGHSKVEYSTTNH 700
++G ++ I RC++C+A +I H + Q HCPQ + YS H
Sbjct: 1552 LKGQSIQPFISRCAVCEAPAVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMH 1602
>AL034369-4|CAA22267.2| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 554 MEGSGMKS*ILRCSLCDAIIDIITAHRYSRQ--HCPQNTGHSKVEYSTTNH 700
++G ++ I RC++C+A +I H + Q HCPQ + YS H
Sbjct: 1552 LKGQSIQPFISRCAVCEAPAVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMH 1602
>AL031622-1|CAI43038.1| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 554 MEGSGMKS*ILRCSLCDAIIDIITAHRYSRQ--HCPQNTGHSKVEYSTTNH 700
++G ++ I RC++C+A +I H + Q HCPQ + YS H
Sbjct: 1552 LKGQSIQPFISRCAVCEAPAVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMH 1602
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,973,895
Number of Sequences: 237096
Number of extensions: 2285678
Number of successful extensions: 3989
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3976
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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