Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c19
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical ...    39   0.004
AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical...    39   0.004
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr...    31   0.93 
U55363-8|AAA97966.1|  829|Caenorhabditis elegans Germinal center...    29   2.9  
Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical ...    28   6.6  

>AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical
           protein C01B4.6 protein.
          Length = 330

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 316 YVPLMGKQGTFYKKHGLFCLMPQNYPDAVNHTNFPNSVLNPGEVYVHRIQYKF 158
           ++   GK+G  YK +    + PQ +  A N  +FP+  L PG+ Y   I Y F
Sbjct: 274 FLDCKGKKGEHYKANKALAIEPQFHSAAPNFDHFPDVSLRPGDHYCQEIVYTF 326


>AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical
           protein Y19D10A.16 protein.
          Length = 330

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 316 YVPLMGKQGTFYKKHGLFCLMPQNYPDAVNHTNFPNSVLNPGEVYVHRIQYKF 158
           ++   GK+G  YK +    + PQ +  A N  +FP+  L PG+ Y   I Y F
Sbjct: 274 FLDCKGKKGEHYKANKALAIEPQFHSAAPNFDHFPDVSLRPGDHYCQEIVYTF 326


>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical protein
            C46A5.4 protein.
          Length = 1432

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 271  GLFCLMPQNYPDAVNHTNFPNSVLNPGEVYVHRIQYKFGILLG 143
            G+F  M  N+ +  NH N   +  NP  VY     +   IL+G
Sbjct: 1122 GVFTRMNDNFQNMTNHVNLTETFSNPSPVYDKNSGHMESILMG 1164


>U55363-8|AAA97966.1|  829|Caenorhabditis elegans Germinal center
           kinase family protein2 protein.
          Length = 829

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -3

Query: 649 MLPRVAMGGYDINYCVTQGTAQDLTFHARALHPVTGRVMELYSNQPGLQFYTGNLLPD 476
           ++P+V MG       V   T   +   A  +HP+TG  + L+  + G+  +  N +PD
Sbjct: 460 LIPKVPMGACFSK--VMDRTELKINCAASWVHPLTGAHLLLFGTEQGIYSFDTNCMPD 515


>Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical
           protein Y48E1A.1a protein.
          Length = 1737

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 620 ITAHRYSRQHCPQNTGHSKVEYSTTNHFLFTCYYSIV 730
           +T ++Y R HCP + GH ++     N  LF   Y+++
Sbjct: 68  MTCNQYER-HCPGHMGHIQLAVPVFNPLLFQFTYNLL 103


>Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical
           protein Y48E1A.1a protein.
          Length = 1737

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 620 ITAHRYSRQHCPQNTGHSKVEYSTTNHFLFTCYYSIV 730
           +T ++Y R HCP + GH ++     N  LF   Y+++
Sbjct: 68  MTCNQYER-HCPGHMGHIQLAVPVFNPLLFQFTYNLL 103


>AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical
           protein Y48E1A.1a protein.
          Length = 1737

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 620 ITAHRYSRQHCPQNTGHSKVEYSTTNHFLFTCYYSIV 730
           +T ++Y R HCP + GH ++     N  LF   Y+++
Sbjct: 68  MTCNQYER-HCPGHMGHIQLAVPVFNPLLFQFTYNLL 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,322,049
Number of Sequences: 27780
Number of extensions: 359152
Number of successful extensions: 837
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)