Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c19
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    25   0.80 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.4  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   7.4  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   7.4  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.8  

>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 194 WRSLRSPNTI*VWYSTRKVYLKYV 123
           W +L  PN +  WY T + ++K V
Sbjct: 28  WNTLLRPNFLDGWYQTLQTHMKKV 51



 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 772 HIFTINADKYTAADDD 725
           H+ TIN   YT   DD
Sbjct: 89  HVVTINETTYTDGSDD 104


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 100 TEFFLYESRQSFYRALLLVNFDGFNCY 20
           T+F +Y S  SFY   +++ F  +N +
Sbjct: 341 TDFIIYSSLSSFYIPCIIMVFLYYNIF 367


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 772 HIFTINADKYTAADDD 725
           H+ TIN   YT   DD
Sbjct: 137 HVVTINETTYTDGSDD 152


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 772 HIFTINADKYTAADDD 725
           H+ TIN   YT   DD
Sbjct: 137 HVVTINETTYTDGSDD 152


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 570 MPEPSIQ*PEELWSCTVTNLACSSIPG 490
           MP+P I  P+ LW  T   ++   IPG
Sbjct: 35  MPQPCILKPKPLW--TGKQISSLIIPG 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,256
Number of Sequences: 438
Number of extensions: 4504
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)