Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11c17
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 31 0.16
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p... 31 0.16
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 31 0.28
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 29 0.65
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 1.5
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos... 28 2.0
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 28 2.0
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 27 3.5
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c... 27 4.6
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 26 6.1
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 26 6.1
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 26 8.1
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 26 8.1
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 31.5 bits (68), Expect = 0.16
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = -1
Query: 460 LESGHEVIRLPPYHCQYNPIELVWAQAKNEVASKNRTFKIADVEVLVHKAISNVSQKNWE 281
+ES EV LP YH Q PIE N+ SK RT + + K ++ ++ K ++
Sbjct: 1 MESSDEV-DLPVYHLQNAPIE---NGKLNDWRSKGRTVAF-KLHPFLRKGLAYINNKEFD 55
Query: 280 DCVKHAEKLQEVD 242
+ ++K +EV+
Sbjct: 56 ENTLKSDKFEEVE 68
>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 340
Score = 31.5 bits (68), Expect = 0.16
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 278 LCEACRKTPRGRLEEISSGRRIRNSCG 198
+C CR+ P +EE SSG + SCG
Sbjct: 19 ICSECREDPPNLVEEFSSGDTVCGSCG 45
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 30.7 bits (66), Expect = 0.28
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1
Query: 586 SEIQEWLREHGIEFSESELKPELLQKVHRNRPEKIYELY 470
SE +WL EH +E S+ +L+ ++ + V P KI E Y
Sbjct: 33 SETMDWLNEHMLEVSKLQLESDIYELV--RTPTKIKEKY 69
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 29.5 bits (63), Expect = 0.65
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 361 KNRTFKIADVEVLVHKAISNVSQKNWEDCVKHAEKLQEVD 242
K+ TF D EVL+ K SQ ++E C+ +A+ ++D
Sbjct: 424 KSSTFSKKDREVLLKKISEIDSQTSFEQCLAYADSAADLD 463
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -3
Query: 863 TRWL-KYKNGKEGQANCSSCRLRKVWFYTRSQMGLPR 756
TRWL +KN E A ++ L KVW++ ++ L R
Sbjct: 2723 TRWLISFKNYAESYAETNNLSLIKVWYHEACRVLLDR 2759
>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 238 SSLPLGVFLHASHNLPSSFAKRSKLPYAL 324
+S + +FL HNLP SF KL Y L
Sbjct: 244 TSADILIFLSKDHNLPVSFYDNYKLKYTL 272
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -1
Query: 583 EIQEWLREHGIEFSESELKPELLQKVHRNRPEKIYELYQLALESGHEVIRLP 428
++ + L EHG+ S ELK EL + + LY L +ES +R+P
Sbjct: 339 KVLQLLHEHGLA-SIPELKHELYMAYIERKTTSLVCLYLLGVESLAPALRIP 389
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Frame = -1
Query: 682 LQSLEELSVIIMD-NAPYHSQQINQ--APTSANKKSEIQEWLREHGIEFSESE 533
+ SL E S +I+ ++ S Q++ +P+S+N K +IQ+ + ++ +EFS E
Sbjct: 776 VDSLPEFSNLILSPSSNDDSFQLDDLLSPSSSNLKQQIQKVVPQNSLEFSVGE 828
>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 135
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 218 FCQMRFLQVYLLEFFCMLHTIFPVLLRNVRNCLMH*HFDVSNFKSSIFAGNFIFCLSPYQ 397
F +FLQ Y F C F V+L V+ C +++F+ F+ + C+ P
Sbjct: 11 FALYKFLQRYFHSFHCFFLLCFTVMLCVVQQC----SSAMTSFRCPTFSLSKYTCVLPAS 66
Query: 398 LNWVIL 415
+ +IL
Sbjct: 67 IPEMIL 72
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -1
Query: 850 NTKTEKRGKLIVRHAGCAKYGFIPEARWVFRAVKS 746
N E + L++ GC FIP+ W+ +S
Sbjct: 87 NDSQETKKVLVLECRGCELVEFIPQGEWIANGAES 121
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -1
Query: 448 HEVIRLPPYHCQYNPIELVWAQAKNEVASKNRTFKIADVEVLVHKAISNVSQKNWEDCV 272
HE++ P+ N ++ + KN+ + K IA+ E +V A+SN ED +
Sbjct: 12 HEILPKEPFDLPMNNLK---SSPKNKDSEKRINNSIAESEQVVDSALSNPETNANEDII 67
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = -1
Query: 622 QINQAPTSANKKSEIQEWLREHGIEFSESELKPELLQKVHRNRPEK---IYELYQLALES 452
Q++Q N++ ++QE + EH S + ++L + + R EK I+E QL
Sbjct: 639 QLSQLENLQNEERKLQEKVNEHESLLSRTN---DILSTLRKERDEKLIPIHEWQQLQERI 695
Query: 451 GHEVIRL 431
H+ + L
Sbjct: 696 EHQTLLL 702
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 547 FSESELKPELLQKVHRNRPEKIYELYQLAL 458
F E ELKPELL+ ++ + +K ++ + AL
Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKAL 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,417,206
Number of Sequences: 5004
Number of extensions: 67870
Number of successful extensions: 247
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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