Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11c17
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 31 1.6
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 31 1.6
11_04_0265 + 15541329-15541568,15541653-15541901,15542172-155423... 29 3.7
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 29 3.7
11_06_0211 + 21305535-21305895,21306512-21306761,21307543-213076... 29 4.9
04_01_0343 - 4481651-4482553,4485144-4485857 29 4.9
02_05_0625 + 30453521-30453890,30454215-30454352,30454458-304547... 29 6.4
02_01_0368 - 2643310-2643999,2645043-2645468,2645694-2645759 29 6.4
11_06_0657 + 25938382-25938443,25938511-25938718,25939222-259392... 28 8.5
03_06_0345 - 33281126-33281783,33281872-33282063,33282175-332822... 28 8.5
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711... 28 8.5
>12_01_0029 +
248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = -1
Query: 634 YHSQQINQAPTSANKKSEIQEWLREHGIEFSESELKPELLQKVHRNRPEKIY 479
Y S ++++ + NKK+ ++ WL E +E SE EL +L++ V + KIY
Sbjct: 443 YESLELSRLVVNQNKKNLLENWLAEDKLECSE-EL-GDLVKTVDNDLALKIY 492
>11_01_0030 +
233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = -1
Query: 634 YHSQQINQAPTSANKKSEIQEWLREHGIEFSESELKPELLQKVHRNRPEKIY 479
Y S ++++ + NKK+ ++ WL E +E SE EL +L++ V + KIY
Sbjct: 443 YESLELSRLVVNQNKKNLLENWLAEDKLECSE-EL-GDLVKTVDNDLALKIY 492
>11_04_0265 +
15541329-15541568,15541653-15541901,15542172-15542321,
15542427-15542901,15543132-15543445,15543875-15543973,
15544567-15544659,15544737-15544922
Length = 601
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Frame = -1
Query: 655 IIMDNAPYHSQQINQAPT--SANKKSEIQEWLREHGIEFSESELKPELLQKVHRNRPEK- 485
I D +P + ++ + P A SE+ LR H +F + E K + + +H + EK
Sbjct: 429 IFEDPSPAKNPEVQETPVPEKATTSSEVPRVLRSHDSKFKD-ENKEKFMDAIHGCQEEKR 487
Query: 484 IYELYQLALESGHEVIRLPPYHCQYNP 404
Y+L + + R C P
Sbjct: 488 TYQLLGSISDLSNTAYREASTRCHKQP 514
>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/87 (25%), Positives = 37/87 (42%)
Frame = -1
Query: 706 FTHWFTKLLQSLEELSVIIMDNAPYHSQQINQAPTSANKKSEIQEWLREHGIEFSESELK 527
F H LQ+L ELS+ + H Q+ E Q E +E +L
Sbjct: 1824 FAHLHLNGLQNLIELSLSGLKFGHLHIDQLQNLRELKVSGVEFQHLHLERLQNITELKLS 1883
Query: 526 PELLQKVHRNRPEKIYELYQLALESGH 446
E +++H ++ + + EL ++E GH
Sbjct: 1884 EERFERLHIDQLQNLKELKFSSVEFGH 1910
>11_06_0211 +
21305535-21305895,21306512-21306761,21307543-21307652,
21308836-21309067,21310233-21310603,21311434-21311507,
21311727-21311880,21312251-21312434,21313066-21313291,
21313704-21314135,21314399-21314456,21314748-21314829,
21315350-21315421,21316594-21316737,21317379-21317457,
21318023-21318105,21318198-21318252,21318488-21318778
Length = 1085
Score = 29.1 bits (62), Expect = 4.9
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Frame = -1
Query: 754 VKSPNEGYHSEMNAKGFTHWFTKLLQSLEELSVIIMDNAPYHSQQINQAPTSANKKSEIQ 575
V+ Y S + K F F+ ++LE LS A Q+N + N S +
Sbjct: 655 VERGRAAYLSGLREKYFGELFSNASRTLEALSRAESSTAFSVDSQLNPHIFAENNMSFTE 714
Query: 574 EWLRE--HGIEFSESELKPELLQKVHRNRPEKIYELYQLALES 452
E L+ IE ESELK L V+RN + +L A E+
Sbjct: 715 EPLKHIARFIESFESELKE--LWLVYRNEGRSLSKLIYTAEET 755
>04_01_0343 - 4481651-4482553,4485144-4485857
Length = 538
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -1
Query: 646 DNAPYHSQQINQAPTSANKKSEIQEWLREHGIEFSESELKPELLQKV 506
DN + SQQ N+ P + ++++ +W E + + +E + L KV
Sbjct: 315 DNWLFTSQQRNKIPVGSEFQAQVPQWTGELPVSYDNAETRKWLGTKV 361
>02_05_0625 +
30453521-30453890,30454215-30454352,30454458-30454727,
30454844-30454983,30455067-30455213,30455319-30456008
Length = 584
Score = 28.7 bits (61), Expect = 6.4
Identities = 21/57 (36%), Positives = 26/57 (45%)
Frame = -1
Query: 868 DGQGGLNTKTEKRGKLIVRHAGCAKYGFIPEARWVFRAVKSPNEGYHSEMNAKGFTH 698
D + L TEK LI RH G AK G + R RA+ SP + S A +H
Sbjct: 413 DQKSYLLVNTEKWQALIRRHGGGAKDGGLVPGR---RAIASPGAVHKSSSFASSTSH 466
>02_01_0368 - 2643310-2643999,2645043-2645468,2645694-2645759
Length = 393
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -1
Query: 523 ELLQKVHRNRPEKIYELYQLALESGHEVIRLPP----YHCQYNPIELV 392
+++ VHR + +Y +Y+L H++I+ P HCQY +L+
Sbjct: 119 DIMMPVHRRSFKDVYLVYELMDTDLHQIIKSPQGLSNDHCQYFLFQLL 166
>11_06_0657 +
25938382-25938443,25938511-25938718,25939222-25939268,
25939473-25939805,25940529-25940613,25940689-25940884,
25941012-25941182,25941261-25941318,25941429-25941657,
25942296-25943183
Length = 758
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -1
Query: 322 VHKAISNVSQKNWEDCVKHAEKLQEVDLKKSHLAEEFVIH 203
+ K + N+S ++W+ + HA K + S EE +H
Sbjct: 243 LRKILGNISDQDWDMIINHALKCKPRPANYSSYTEEMNVH 282
>03_06_0345 -
33281126-33281783,33281872-33282063,33282175-33282217,
33282751-33282874,33282966-33283058,33284484-33284685,
33284751-33284857,33285462-33285543,33285629-33285666,
33285751-33285837,33286324-33286434,33286554-33286904
Length = 695
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 568 LREHGIEFSESELKPELLQKVHRNRPEK 485
LR HG + SE E KPE L + R R +
Sbjct: 457 LRSHGYQGSEWEKKPETLDRRQRKRSRR 484
>01_06_1061 -
34169469-34169624,34170837-34170938,34171029-34171180,
34172087-34172153,34172239-34172419,34172655-34172778,
34174775-34174871,34175929-34176331,34176729-34176888,
34177412-34177486,34177714-34177892,34178224-34178303,
34178561-34179322
Length = 845
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = -1
Query: 715 AKGFTHWFTKLLQSLEELSVIIMDNAPYHSQQINQAPTSANKKSEIQEWLREHGIEFSES 536
A TH KL++ L ++++++ +HS A S +E RE G+ S
Sbjct: 19 APAATHKHCKLVRELGLVALLLVRELLHHSASAACAWGGEGGGSSNKERERERGVRIMPS 78
Query: 535 ELKPE 521
+ KPE
Sbjct: 79 KAKPE 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,984,481
Number of Sequences: 37544
Number of extensions: 454298
Number of successful extensions: 1249
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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