Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c17
         (874 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY102660-1|AAM27489.1|  818|Drosophila melanogaster GH10652p pro...    33   0.51 
AY069298-1|AAL39443.1|  157|Drosophila melanogaster HL01868p pro...    33   0.51 
AE014296-1164|AAN12065.1|  157|Drosophila melanogaster CG10077-P...    33   0.51 
AE014296-1163|AAF50635.2|  818|Drosophila melanogaster CG10077-P...    33   0.51 
U33463-1|AAC47095.1|  345|Drosophila melanogaster transposase pr...    31   2.1  
AY157937-1|AAN35199.1|  337|Drosophila melanogaster MSP-300 prot...    29   8.4  
AY118883-1|AAM50743.1|  475|Drosophila melanogaster HL01686p pro...    29   8.4  
AY069852-1|AAL39997.1|  407|Drosophila melanogaster SD10272p pro...    29   8.4  
AE014134-887|AAZ66448.1| 9606|Drosophila melanogaster CG33715-PE...    29   8.4  
AE014134-886|AAZ66447.1| 7744|Drosophila melanogaster CG33715-PB...    29   8.4  
AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-P...    29   8.4  

>AY102660-1|AAM27489.1|  818|Drosophila melanogaster GH10652p
           protein.
          Length = 818

 Score = 33.1 bits (72), Expect = 0.51
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -1

Query: 466 LALESGHEVIRLPPYHCQYNPIELVWAQAKNEVASKNRTFKIADVEVL--VHKAISNVSQ 293
           L+L + H ++++    C  N   +   +   +++++N T  I  VE    V +   N+S+
Sbjct: 368 LSLSANHNILQIVDV-CDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISR 426

Query: 292 KNWEDCVKHAEKLQE 248
           + W  C  H +K Q+
Sbjct: 427 QGWRACAIHGDKSQQ 441


>AY069298-1|AAL39443.1|  157|Drosophila melanogaster HL01868p
           protein.
          Length = 157

 Score = 33.1 bits (72), Expect = 0.51
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -1

Query: 466 LALESGHEVIRLPPYHCQYNPIELVWAQAKNEVASKNRTFKIADVEVL--VHKAISNVSQ 293
           L+L + H ++++    C  N   +   +   +++++N T  I  VE    V +   N+S+
Sbjct: 53  LSLSANHNILQIVDV-CDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISR 111

Query: 292 KNWEDCVKHAEKLQE 248
           + W  C  H +K Q+
Sbjct: 112 QGWRACAIHGDKSQQ 126


>AE014296-1164|AAN12065.1|  157|Drosophila melanogaster CG10077-PB,
           isoform B protein.
          Length = 157

 Score = 33.1 bits (72), Expect = 0.51
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -1

Query: 466 LALESGHEVIRLPPYHCQYNPIELVWAQAKNEVASKNRTFKIADVEVL--VHKAISNVSQ 293
           L+L + H ++++    C  N   +   +   +++++N T  I  VE    V +   N+S+
Sbjct: 53  LSLSANHNILQIVDV-CDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISR 111

Query: 292 KNWEDCVKHAEKLQE 248
           + W  C  H +K Q+
Sbjct: 112 QGWRACAIHGDKSQQ 126


>AE014296-1163|AAF50635.2|  818|Drosophila melanogaster CG10077-PA,
           isoform A protein.
          Length = 818

 Score = 33.1 bits (72), Expect = 0.51
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -1

Query: 466 LALESGHEVIRLPPYHCQYNPIELVWAQAKNEVASKNRTFKIADVEVL--VHKAISNVSQ 293
           L+L + H ++++    C  N   +   +   +++++N T  I  VE    V +   N+S+
Sbjct: 368 LSLSANHNILQIVDV-CDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISR 426

Query: 292 KNWEDCVKHAEKLQE 248
           + W  C  H +K Q+
Sbjct: 427 QGWRACAIHGDKSQQ 441


>U33463-1|AAC47095.1|  345|Drosophila melanogaster transposase
           protein.
          Length = 345

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 499 NRPE-KIYELYQLALESGHEVIRLPPYHCQYNPIELVWAQAKNEVASK 359
           N P+ K Y +    L +  +VI  PP     NPIE +WA  K +VA +
Sbjct: 249 NDPKHKEYNVRNWLLYNCGKVIDTPPQSPDLNPIENLWAYLKKKVAKR 296


>AY157937-1|AAN35199.1|  337|Drosophila melanogaster MSP-300
           protein.
          Length = 337

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = -1

Query: 583 EIQEWLREHGIEFSESELKP----ELLQKVHRNRPEKIYELYQLALESGHEVI 437
           E+Q WL +  ++  E  L P    ELLQ+++ +    IYE + L   +G  +I
Sbjct: 147 EVQRWLLQAEVQVQERSLTPTQMKELLQRIN-HEITAIYERFTLVKTNGQLII 198


>AY118883-1|AAM50743.1|  475|Drosophila melanogaster HL01686p
           protein.
          Length = 475

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = -1

Query: 583 EIQEWLREHGIEFSESELKP----ELLQKVHRNRPEKIYELYQLALESGHEVI 437
           E+Q WL +  ++  E  L P    ELLQ+++ +    IYE + L   +G  +I
Sbjct: 24  EVQRWLLQAEVQVQERSLTPTQMKELLQRIN-HEITAIYERFTLVKTNGQLII 75


>AY069852-1|AAL39997.1|  407|Drosophila melanogaster SD10272p
           protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = -1

Query: 583 EIQEWLREHGIEFSESELKP----ELLQKVHRNRPEKIYELYQLALESGHEVI 437
           E+Q WL +  ++  E  L P    ELLQ+++ +    IYE + L   +G  +I
Sbjct: 24  EVQRWLLQAEVQVQERSLTPTQMKELLQRIN-HEITAIYERFTLVKTNGQLII 75


>AE014134-887|AAZ66448.1| 9606|Drosophila melanogaster CG33715-PE,
           isoform E protein.
          Length = 9606

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = -1

Query: 583 EIQEWLREHGIEFSESELKP----ELLQKVHRNRPEKIYELYQLALESGHEVI 437
           E+Q WL +  ++  E  L P    ELLQ+++ +    IYE + L   +G  +I
Sbjct: 24  EVQRWLLQAEVQVQERSLTPTQMKELLQRIN-HEITAIYERFTLVKTNGQLII 75


>AE014134-886|AAZ66447.1| 7744|Drosophila melanogaster CG33715-PB,
            isoform B protein.
          Length = 7744

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = -1

Query: 583  EIQEWLREHGIEFSESELKP----ELLQKVHRNRPEKIYELYQLALESGHEVI 437
            E+Q WL +  ++  E  L P    ELLQ+++ +    IYE + L   +G  +I
Sbjct: 7361 EVQRWLLQAEVQVQERSLTPTQMKELLQRIN-HEITAIYERFTLVKTNGQLII 7412


>AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-PD,
            isoform D protein.
          Length = 11707

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = -1

Query: 583  EIQEWLREHGIEFSESELKP----ELLQKVHRNRPEKIYELYQLALESGHEVI 437
            E+Q WL +  ++  E  L P    ELLQ+++ +    IYE + L   +G  +I
Sbjct: 7361 EVQRWLLQAEVQVQERSLTPTQMKELLQRIN-HEITAIYERFTLVKTNGQLII 7412


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,187,145
Number of Sequences: 53049
Number of extensions: 777647
Number of successful extensions: 2639
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2639
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4229643912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)