Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c17
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-6|AAY86298.2|  488|Caenorhabditis elegans Hypothetical ...    82   6e-16
AF000266-12|AAC71168.1|   97|Caenorhabditis elegans Hypothetical...    46   4e-05
Z68319-4|CAA92702.1|  884|Caenorhabditis elegans Hypothetical pr...    39   0.004
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AF016684-15|AAB66214.1|  543|Caenorhabditis elegans Hypothetical...    29   5.7  

>AC024817-6|AAY86298.2|  488|Caenorhabditis elegans Hypothetical
           protein Y54G2A.42 protein.
          Length = 488

 Score = 81.8 bits (193), Expect = 6e-16
 Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 14/180 (7%)
 Frame = -1

Query: 733 YHSEMNAKGFTHWFTKLLQSLEELS------VIIMDNAPYHSQQINQAPTSANKKSEIQE 572
           YH  M+++ +  +  K+L  +   +      V+++DN   H+Q   + PT ++KK +I  
Sbjct: 285 YHKSMDSEMYYKYMEKVLPEIVAAAPPGRQPVMVIDNCAIHNQTTLKLPTKSSKKEDITN 344

Query: 571 WLREHGIEFSESELKPEL------LQKVHRNRPEKI-YELYQLALESGHEVIRLPPYHCQ 413
           +L++ G+    S  K EL        ++H  R   + YE+ ++A   G +++RLPPYHC 
Sbjct: 345 FLKDQGVAVDPSLKKDELWDEADSYMRMHGGRKALMKYEVDEMAARLGVQIVRLPPYHCC 404

Query: 412 YNPIELVWAQAKNEVASKNR-TFKIADVEVLVHKAISNVSQKNWEDCVKHAEKLQEVDLK 236
            NPIEL+W Q K+ +    +   K+  V     + + ++ ++   + + H     E+DLK
Sbjct: 405 LNPIELIWNQLKSFLRKHGKFDSKLETVRTQAIQFLKSIDEEAVANIMDHVMD-AEIDLK 463


>AF000266-12|AAC71168.1|   97|Caenorhabditis elegans Hypothetical
           protein W08F4.1 protein.
          Length = 97

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = -1

Query: 445 EVIRLPPYHCQYNPIELVWAQAKNEVASKNR-TFKIADVEVLVHKAISNVSQKNWEDCVK 269
           +++RLPPYHC  NPIEL+W Q K+ +    +   K+  V     + + ++ ++   + + 
Sbjct: 3   KIVRLPPYHCCLNPIELIWNQLKSFLRKHGKLDSKLETVRTQAIQFLKSIDEEAVANTMD 62

Query: 268 HAEKLQEVDLK 236
           H     E+DLK
Sbjct: 63  HVMD-AEIDLK 72


>Z68319-4|CAA92702.1|  884|Caenorhabditis elegans Hypothetical
           protein T23G7.4 protein.
          Length = 884

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -1

Query: 385 QAKNEVASKNRTFKIADVEVLVHKAISNVSQKNWEDCVKHAEKLQE 248
           +  NE+ +K     + D+E ++ K ++NV +K  E  VKH +++QE
Sbjct: 662 KGNNEITTKKLLIAVGDIEFIIAKTLNNVGKKMQECGVKHVDQIQE 707


>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
           protein ZK287.4 protein.
          Length = 1208

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 265 HASHNLPSS--FAKRSKLPYALTLRRQQF*KFYFCWQ 369
           H+ +  PSS  FA R  LP A+   +Q+  +FYF W+
Sbjct: 33  HSFYCCPSSRKFANRCHLPPAVGYGKQRMRRFYFDWK 69


>AF016684-15|AAB66214.1|  543|Caenorhabditis elegans Hypothetical
           protein F45C12.15 protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 764 LPRCEVSER-GLPFRNECQRLHTLVYKTAAES*RTISHHNGQR 639
           LP  E+ E+     R   Q++H L+YKT AE  +  S+ NG+R
Sbjct: 174 LPSVELKEQWAQELRTTVQKVHVLLYKTRAEVMK--SYLNGER 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,246,383
Number of Sequences: 27780
Number of extensions: 387834
Number of successful extensions: 1273
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)