Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c16
         (826 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf (diva...    31   1.3  
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z54327-8|CAA91121.2|  451|Caenorhabditis elegans Hypothetical pr...    29   5.3  
AC084159-20|AAK39363.1|  315|Caenorhabditis elegans Hypothetical...    28   7.1  
AC024772-1|AAF60536.2|  242|Caenorhabditis elegans Hypothetical ...    28   7.1  

>U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 2 protein.
          Length = 465

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 390 KLPNDLSVVLTFSVPKKIMTNFHKSRPSSFFCFV 491
           +LP  L  ++TF+  K+IM NF  S+P  +F  +
Sbjct: 343 QLPFALIPMITFTSSKRIMHNFRTSKPLQYFSII 376


>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical protein
            F01G4.3 protein.
          Length = 1266

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = -2

Query: 609  QYLKTKIPRISDAKLKEEIFVDQQILT*ANER*KF*FEVERSRKKSLGGFCESL 448
            +Y  T+IPR  D +L E +    Q +T A    K   E+E    K LG FC++L
Sbjct: 958  EYNMTQIPRFRDRELSENVKKLLQQITTAVPGLKS-GEIETYTWKELGSFCQNL 1010


>Z54327-8|CAA91121.2|  451|Caenorhabditis elegans Hypothetical
           protein C26D10.3 protein.
          Length = 451

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -2

Query: 726 LKNVSQKPLVPSEK-KFLPPLT*GWDSRKTISKININE*FQYLKTKIPRISDAKLKEEIF 550
           +K  +   L P  + +FL      WDS K    +  NE  +Y K  I   S  K ++E+ 
Sbjct: 57  VKETNCHELFPDSRIRFLNDTVVTWDSSKNEIHLQNNEKLKYDKLCIATGSRPKFQKELG 116

Query: 549 VDQQIL 532
           +D++I+
Sbjct: 117 IDRRIV 122


>AC084159-20|AAK39363.1|  315|Caenorhabditis elegans Hypothetical
           protein Y73B3A.9 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = -3

Query: 464 AFVKVCHNFLGNRKSENY*QIIRELLFAYKALGCNMSLKIYFSDSLLDLFPENLGAVSDE 285
           AF K+   FL  RK+E      +  L     L C  +    +S + L+ FPE L   S E
Sbjct: 32  AFNKINRTFLNFRKTEE----CKNTLAVPSILNCTKATPTIYSINDLNTFPEFLALRSPE 87

Query: 284 Y 282
           Y
Sbjct: 88  Y 88


>AC024772-1|AAF60536.2|  242|Caenorhabditis elegans Hypothetical
           protein Y40C5A.1 protein.
          Length = 242

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 242 VFQCALYPDETFHHIHLIRLQDFQERDLKES 334
           V +C   PD    H+H IRL+D++ R +  +
Sbjct: 89  VMECVQNPDHILPHLH-IRLEDYRPRSISRN 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,064,124
Number of Sequences: 27780
Number of extensions: 377559
Number of successful extensions: 838
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)