Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c16
         (826 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.64 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.64 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   1.1  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   4.5  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   6.0  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   6.0  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   6.0  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   7.9  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 109 SVISLYGEKIYFVVFLFVIVSIGVSQRIDQQKSASTAA-DHFP 234
           +V+ L G  I+  +F F+++ IG+  +    +   TAA D +P
Sbjct: 366 AVLELPGSSIWSCLFFFMLILIGLDSQFCTVEGFITAAVDEWP 408


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 109 SVISLYGEKIYFVVFLFVIVSIGVSQRIDQQKSASTAA-DHFP 234
           +V+ L G  I+  +F F+++ IG+  +    +   TAA D +P
Sbjct: 419 AVLELPGSSIWSCLFFFMLILIGLDSQFCTVEGFITAAVDEWP 461


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = -2

Query: 741 TLNPGLKNVSQKPLVPSEKKFLPPLT*GWDSRKTISKINI-NE*FQYLKTKIPRISDAKL 565
           T+NP L N+       + K  LP     W S+K+  + +I +   +Y ++   +  D + 
Sbjct: 342 TVNPLLYNIMSNKFREAFKLMLPNCCGKWSSQKSEPRRSIYSSLLRYPRSIFRQTDDHQN 401

Query: 564 KEEIFV--DQQILT 529
              IF+  D Q LT
Sbjct: 402 SPSIFISDDNQKLT 415


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 79  NYSHKMNIYRSVISLYGEKIYFVVFLFVIVSIGV 180
           NY++  N Y+   + Y +K+Y+  ++  I  I V
Sbjct: 321 NYNYNNNNYKYNYNNYNKKLYYKNYIINIEQIPV 354


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 527 ELMKDENFNSKLNEAEKRAWAAFVKVCH 444
           E  +D++FN++ +++EKR      +V H
Sbjct: 62  EKSEDDSFNNQADKSEKRIPLYVCRVLH 89


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 380 YKALGCNMSLKIYFSDSLLDLFP 312
           YK L CN   K+Y++ + ++  P
Sbjct: 96  YKKLYCNNYKKLYYNINYIEQIP 118


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 380 YKALGCNMSLKIYFSDSLLDLFP 312
           YK L CN   K+Y++ + ++  P
Sbjct: 96  YKKLYCNNYKKLYYNINYIEQIP 118


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 380 YKALGCNMSLKIYFSDSLLDLFP 312
           YK L CN   K+Y++ + ++  P
Sbjct: 96  YKKLYCNNYRKLYYNINYIEQIP 118


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 230 SHCSVFQCALYPDE 271
           S C + QCA  PDE
Sbjct: 54  SACGIVQCAKGPDE 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,797
Number of Sequences: 438
Number of extensions: 5023
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)