Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c14
         (717 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ341263-1|ABC67466.1| 1471|Homo sapiens Fanconi anemia, complem...    30   9.5  
AK022613-1|BAB14132.1|  664|Homo sapiens protein ( Homo sapiens ...    30   9.5  
AF340183-1|AAK15369.1| 1451|Homo sapiens Fanconi anemia compleme...    30   9.5  
AF273251-2|AAK18772.1| 1471|Homo sapiens Fanconi anemia compleme...    30   9.5  
AF273251-1|AAK18773.1| 1451|Homo sapiens Fanconi anemia compleme...    30   9.5  
AF230336-1|AAL05980.1| 1471|Homo sapiens Fanconi anemia compleme...    30   9.5  

>DQ341263-1|ABC67466.1| 1471|Homo sapiens Fanconi anemia,
           complementation group D2 protein.
          Length = 1471

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 580 LFHLVLYSIIYYTTCQKKKYFSRVL 506
           +F LV+  IIY T  Q KKY  RVL
Sbjct: 379 VFDLVMLFIIYSTNTQTKKYIDRVL 403


>AK022613-1|BAB14132.1|  664|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12551 fis, clone NT2RM4000700. ).
          Length = 664

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 580 LFHLVLYSIIYYTTCQKKKYFSRVL 506
           +F LV+  IIY T  Q KKY  RVL
Sbjct: 183 VFDLVMLFIIYSTNTQTKKYIDRVL 207


>AF340183-1|AAK15369.1| 1451|Homo sapiens Fanconi anemia
           complementation group D2 protein protein.
          Length = 1451

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 580 LFHLVLYSIIYYTTCQKKKYFSRVL 506
           +F LV+  IIY T  Q KKY  RVL
Sbjct: 379 VFDLVMLFIIYSTNTQTKKYIDRVL 403


>AF273251-2|AAK18772.1| 1471|Homo sapiens Fanconi anemia
           complementation group D2 protein, isoform 1 protein.
          Length = 1471

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 580 LFHLVLYSIIYYTTCQKKKYFSRVL 506
           +F LV+  IIY T  Q KKY  RVL
Sbjct: 379 VFDLVMLFIIYSTNTQTKKYIDRVL 403


>AF273251-1|AAK18773.1| 1451|Homo sapiens Fanconi anemia
           complementation group D2 protein, isoform 2 protein.
          Length = 1451

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 580 LFHLVLYSIIYYTTCQKKKYFSRVL 506
           +F LV+  IIY T  Q KKY  RVL
Sbjct: 379 VFDLVMLFIIYSTNTQTKKYIDRVL 403


>AF230336-1|AAL05980.1| 1471|Homo sapiens Fanconi anemia
           complementation group D2 protein protein.
          Length = 1471

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 580 LFHLVLYSIIYYTTCQKKKYFSRVL 506
           +F LV+  IIY T  Q KKY  RVL
Sbjct: 379 VFDLVMLFIIYSTNTQTKKYIDRVL 403


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,937,341
Number of Sequences: 237096
Number of extensions: 1515419
Number of successful extensions: 1049
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)