Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c14
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 357 DPTLQIILILTLASGMALNFSXXPRD 280
           D T+  ++ LTL    A+NF   P D
Sbjct: 148 DKTILYMVKLTLKLSCAMNFLIYPHD 173


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 422 LYFILGCIQANLCIA*T 372
           LYFI GC+Q  L  A T
Sbjct: 283 LYFIRGCLQTYLINAST 299


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 422 LYFILGCIQANLCIA*T 372
           LYFI GC+Q  L  A T
Sbjct: 321 LYFIRGCLQTYLINAST 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,614
Number of Sequences: 438
Number of extensions: 3165
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)