Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c12
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71259-5|CAA95796.1|  106|Caenorhabditis elegans Hypothetical pr...    88   4e-18
Z66500-5|CAA91306.1|  168|Caenorhabditis elegans Hypothetical pr...    61   5e-10
U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical pr...    51   6e-07
Z11126-2|CAA77473.1|  197|Caenorhabditis elegans Hypothetical pr...    30   0.85 
Z69794-1|CAA93679.2|  663|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z83231-5|CAB05753.1|  239|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AL023847-9|CAA19553.1|  239|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z71259-5|CAA95796.1|  106|Caenorhabditis elegans Hypothetical
           protein F13G3.4 protein.
          Length = 106

 Score = 87.8 bits (208), Expect = 4e-18
 Identities = 44/101 (43%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
 Frame = -2

Query: 344 DDVSKIIKEAIENSIGG-TAYQHNNVNQWTSAVVESCLGQLTKLQKPYKYVVTCTILQ-K 171
           +DV  IIK+ ++  +G  T Y H +  QW    VE    +L    KPYKYVVT + LQ  
Sbjct: 6   EDVHMIIKQVLDEVVGASTQYTHKDSVQWNQKAVEQITKKLVAAGKPYKYVVTSSFLQIS 65

Query: 170 NGAGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSVFGLGI 48
           +G+GL+ S+  YW+  TD S   RWE KTM  IV VF + I
Sbjct: 66  SGSGLNVSTISYWNKVTDSSYMYRWEAKTMLAIVYVFAIAI 106


>Z66500-5|CAA91306.1|  168|Caenorhabditis elegans Hypothetical
           protein T05C12.5 protein.
          Length = 168

 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
 Frame = -2

Query: 341 DVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQKPYKYVVTCTILQK-NG 165
           ++  II+++ ++ IG T Y    ++ W S ++++    L KL    K++V CTI  K + 
Sbjct: 66  EIDLIIQKSFDSIIGKTPYSPFKMSDWMSKMIQTISDNLVKLNGSKKFLVHCTISAKTDN 125

Query: 164 AGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSVF 60
             + T++ C WD T D +    W +KT++  V VF
Sbjct: 126 LAICTANMCSWDTTKDTAYYSEWMSKTIFGAVQVF 160


>U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical
           protein D1009.5 protein.
          Length = 123

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
 Frame = -2

Query: 338 VSKIIKEAIENSIGG-TAYQHNNVNQWTSAVVESCLGQLTKLQKP-YKYVVTCTILQKNG 165
           V+ +I+E +   +G  T Y  +     +  +  S   +L  LQ P YKYV+   I ++ G
Sbjct: 24  VAGMIQEILGEKLGALTIYNVDEAELVSKDISASIRERLKGLQLPRYKYVIQTMIAEQCG 83

Query: 164 AGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSVFGL 54
            G  T+  C WD   DG  T R+   +++C V VF +
Sbjct: 84  NGATTAVQCVWDEDCDGYLTQRYVTGSIWCEVLVFAI 120


>Z11126-2|CAA77473.1|  197|Caenorhabditis elegans Hypothetical
           protein ZK643.2 protein.
          Length = 197

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 131 PNNKKNLYAVLHHSSAVL---CRSLHICMVFVT*STAPDMTQQLLKS 262
           P + K+LY V    +A++   C +LH C V+VT        Q L++S
Sbjct: 107 PEDNKHLYVVHAEMNAIINKRCTTLHDCTVYVTLFPCNKCAQMLIQS 153


>Z69794-1|CAA93679.2|  663|Caenorhabditis elegans Hypothetical
           protein R03G8.1 protein.
          Length = 663

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 498 WPNCLVCRTSLVSKFKQKFHFDNVQYLLPILKQN-NGS 388
           WPNCL  R   +  + + F   + +Y  P+ +++ NGS
Sbjct: 290 WPNCLGYRNQSIDHYMRPFQLAHEKYGTPVTREHLNGS 327


>Z83231-5|CAB05753.1|  239|Caenorhabditis elegans Hypothetical
           protein Y57A10C.1 protein.
          Length = 239

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 84  YVLHCLSLWAWHIIMDLLYSF 22
           Y+L C+S+  WH++  + Y+F
Sbjct: 115 YLLCCISIEVWHLVSPIQYTF 135


>AL023847-9|CAA19553.1|  239|Caenorhabditis elegans Hypothetical
           protein Y57A10C.1 protein.
          Length = 239

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 84  YVLHCLSLWAWHIIMDLLYSF 22
           Y+L C+S+  WH++  + Y+F
Sbjct: 115 YLLCCISIEVWHLVSPIQYTF 135


>Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical
           protein B0462.1 protein.
          Length = 548

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 251 VVESCLGQLTKLQKPYKYVVTC 186
           VV  C    TKL  PY YV++C
Sbjct: 378 VVFDCKSFFTKLFSPYAYVISC 399


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,201,134
Number of Sequences: 27780
Number of extensions: 259835
Number of successful extensions: 719
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)