Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c09
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    29   1.1  
SPBC36.08c |cog2||Golgi transport complex subunit Cog2 |Schizosa...    27   3.4  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.9  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    26   7.9  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   7.9  

>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 674 GPDNRWVPMNFTGPDGMFYSAEEGF 600
           GPD R VP+N  G   M++++++ F
Sbjct: 118 GPDGRQVPLNLAGITEMYHTSDDKF 142


>SPBC36.08c |cog2||Golgi transport complex subunit Cog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 191

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = -2

Query: 698 EINKDGYIGPDNRWVPMNFTGPDGMFYSAEEGFFTDSNGRNLKIGVDGYID 546
           E+ KDG   PD   V   F G DG+        F   N   + +  D Y D
Sbjct: 26  ELRKDGPFSPDEFLVSKRFLGLDGLVNELSR-LFEQVNNELMLLVKDNYQD 75


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 665 YLDLCIHLCLFPSRNDPGPRNHLDHCILV 751
           Y+   ++ CLF + N+  P+++LD+ I V
Sbjct: 418 YVYASLYACLFCNLNEGSPKDYLDNDIYV 446


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 46  ESCIVKGEIFFLGVFEALLAFIGGFNSLRSSYISS 150
           +S ++  E  +  V+EA L FIGG  +  +SY+++
Sbjct: 292 DSNVIDLEKQYNQVYEAPLGFIGGIETEATSYVAA 326


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 309 FIFVIEINFCRERFFTFSTDLWSYLWAFT-LFIELTFLYQVRFNLFDNFFITN 464
           F  + ++     + F  S +L +Y   F  + + LT +++V FNLFD   +++
Sbjct: 135 FTIIDDMRAQSRKSFKGSAELRNYTRCFRQIILLLTNMFRVGFNLFDEMEVSS 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,790,720
Number of Sequences: 5004
Number of extensions: 83887
Number of successful extensions: 224
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)