Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c09
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0206 + 1487034-1489430                                           31   1.2  
08_02_0822 + 21549257-21550729,21550776-21550877                       30   2.1  
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683...    30   2.1  
05_04_0111 - 18079051-18079970,18080384-18080462                       29   3.6  
07_01_0828 - 6679393-6680432,6680448-6680784                           29   6.3  
02_01_0505 + 3676117-3676890                                           29   6.3  

>05_01_0206 + 1487034-1489430
          Length = 798

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +1

Query: 340 GSAFLLLAPISGVICGLLPFSSSLLFCTKSGLTSLIIFLLPIVDDVKV 483
           G+AF LL     + CGL+  + SLL  ++ GL +  + L PI+  V V
Sbjct: 253 GTAFELLVAGGNLTCGLVSANFSLLCWSRDGLVAAEVNLPPILPGVCV 300


>08_02_0822 + 21549257-21550729,21550776-21550877
          Length = 524

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = -2

Query: 236 TRSK-SPAKSQGMSYMDPKKLAKYREIMQGLEIYDDLRELKPPMKANRASNTPRKKISPF 60
           TRS+    +S+ M  M+  +  K + IM   E+Y+ L  ++  M+ + +  TPR   S  
Sbjct: 429 TRSRLKRVQSEKMVEMNDTRKNKEQIIMLK-EVYEQLNMIESHMRPSTSQETPRNDQSLE 487

Query: 59  TMHDSSLSKNYSNCTT 12
           ++ +SS   N++N  T
Sbjct: 488 SVLESSNMSNHANFPT 503


>07_03_0405 -
           17767303-17767665,17767815-17768039,17768115-17768342,
           17768607-17768621,17768622-17768810,17769106-17769213,
           17769917-17770045
          Length = 418

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 818 YKVKLVDKHGSPV-PRFFKGPDGKQECSDLGGFWGPDHF 705
           Y V  +++ G+ V P  F   DGK + +D G F+G  HF
Sbjct: 308 YFVGSINRVGTEVFPNPFTSGDGKPQHADFGHFYGSSHF 346


>05_04_0111 - 18079051-18079970,18080384-18080462
          Length = 332

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/44 (27%), Positives = 29/44 (65%)
 Frame = -3

Query: 430 LTWYRKVSSMKRVKAHK*LQRSVLKVKKRSLQKLISITKIKHGK 299
           L +YR+++ +K+VK ++ +   + K ++  ++++  I + KHGK
Sbjct: 212 LYFYRELARVKKVKKNEDMAVEIFKNQETKIEQIKRIEQDKHGK 255


>07_01_0828 - 6679393-6680432,6680448-6680784
          Length = 458

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/44 (27%), Positives = 28/44 (63%)
 Frame = -3

Query: 430 LTWYRKVSSMKRVKAHK*LQRSVLKVKKRSLQKLISITKIKHGK 299
           L +YR+++ +K+VK ++ +   + K  +  ++++  I + KHGK
Sbjct: 345 LYFYRELARVKKVKKNEDMAVEIFKNHETKIEQIKRIEQDKHGK 388


>02_01_0505 + 3676117-3676890
          Length = 257

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 322 LKLTFAGSAFLLL--APISGVICGLLPFSS 405
           L+ TF GS  +    API G+ICGL+ F S
Sbjct: 148 LRQTFLGSKIVSFHHAPIFGLICGLVGFDS 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,680,204
Number of Sequences: 37544
Number of extensions: 512325
Number of successful extensions: 1411
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)