Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11c09
(858 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC033617-1|AAH33617.1| 519|Homo sapiens t-complex 11 (mouse)-li... 31 5.4
U33837-1|AAB41649.1| 4655|Homo sapiens gp330 precursor protein. 30 9.4
U04441-1|AAB02882.1| 1751|Homo sapiens glycoprotein 330 protein. 30 9.4
S73145-1|AAB30825.1| 268|Homo sapiens calcium sensor protein pr... 30 9.4
BC035575-1|AAH35575.1| 1283|Homo sapiens peroxisome biogenesis f... 30 9.4
AY265358-1|AAP88586.1| 4655|Homo sapiens glycoprotein receptor g... 30 9.4
AY265357-1|AAP88585.1| 4655|Homo sapiens glycoprotein receptor g... 30 9.4
AF030356-1|AAB99758.1| 1283|Homo sapiens peroxisome biogenesis g... 30 9.4
AF026086-1|AAB87880.1| 1283|Homo sapiens peroxisome biogenesis d... 30 9.4
AC007556-2|AAX88965.1| 3881|Homo sapiens unknown protein. 30 9.4
AC000064-1|AAB46346.1| 541|Homo sapiens WUGSC:H_RG083M05.1 prot... 30 9.4
AB052092-1|BAB59063.1| 1283|Homo sapiens Pex1pG843D protein. 30 9.4
AB052091-1|BAB59062.1| 1283|Homo sapiens Pex1pL664P protein. 30 9.4
AB052090-1|BAB59061.1| 1226|Homo sapiens Pex1p-634del690 protein. 30 9.4
AB008112-1|BAA85162.1| 1283|Homo sapiens PEX1 protein. 30 9.4
>BC033617-1|AAH33617.1| 519|Homo sapiens t-complex 11 (mouse)-like
2 protein.
Length = 519
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 549 DVAIHTNLQITSIAVREKTLFGRVKHTI 632
++A++ N Q+ A+ EK+L GRVKH +
Sbjct: 80 EIAVNENFQLKQEALPEKSLAGRVKHIV 107
>U33837-1|AAB41649.1| 4655|Homo sapiens gp330 precursor protein.
Length = 4655
Score = 30.3 bits (65), Expect = 9.4
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 602 NP-LRQSKTYHRVR*SSLVPNDYLDLCIHLCL 694
NP L Q + +H++R + VPN +C HLCL
Sbjct: 4312 NPWLTQVRIFHQLRYNKSVPNLCKQICSHLCL 4343
>U04441-1|AAB02882.1| 1751|Homo sapiens glycoprotein 330 protein.
Length = 1751
Score = 30.3 bits (65), Expect = 9.4
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 602 NP-LRQSKTYHRVR*SSLVPNDYLDLCIHLCL 694
NP L Q + +H++R + VPN +C HLCL
Sbjct: 1610 NPWLTQVRIFHQLRYNKSVPNLCKQICSHLCL 1641
>S73145-1|AAB30825.1| 268|Homo sapiens calcium sensor protein
protein.
Length = 268
Score = 30.3 bits (65), Expect = 9.4
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 602 NP-LRQSKTYHRVR*SSLVPNDYLDLCIHLCL 694
NP L Q + +H++R + VPN +C HLCL
Sbjct: 174 NPWLTQVRIFHQLRYNKSVPNLCKQICSHLCL 205
>BC035575-1|AAH35575.1| 1283|Homo sapiens peroxisome biogenesis
factor 1 protein.
Length = 1283
Score = 30.3 bits (65), Expect = 9.4
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 522 VPRPFSIFVDVAIHTNLQITSIAVREK 602
V R F++ VD AIH+ L SI+ REK
Sbjct: 780 VARDFTVLVDRAIHSRLSRQSISTREK 806
>AY265358-1|AAP88586.1| 4655|Homo sapiens glycoprotein receptor
gp330/megalin precursor protein.
Length = 4655
Score = 30.3 bits (65), Expect = 9.4
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 602 NP-LRQSKTYHRVR*SSLVPNDYLDLCIHLCL 694
NP L Q + +H++R + VPN +C HLCL
Sbjct: 4312 NPWLTQVRIFHQLRYNKSVPNLCKQICSHLCL 4343
>AY265357-1|AAP88585.1| 4655|Homo sapiens glycoprotein receptor
gp330/megalin precursor protein.
Length = 4655
Score = 30.3 bits (65), Expect = 9.4
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 602 NP-LRQSKTYHRVR*SSLVPNDYLDLCIHLCL 694
NP L Q + +H++R + VPN +C HLCL
Sbjct: 4312 NPWLTQVRIFHQLRYNKSVPNLCKQICSHLCL 4343
>AF030356-1|AAB99758.1| 1283|Homo sapiens peroxisome biogenesis gene
1 protein.
Length = 1283
Score = 30.3 bits (65), Expect = 9.4
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 522 VPRPFSIFVDVAIHTNLQITSIAVREK 602
V R F++ VD AIH+ L SI+ REK
Sbjct: 780 VARDFTVLVDRAIHSRLSRQSISTREK 806
>AF026086-1|AAB87880.1| 1283|Homo sapiens peroxisome biogenesis
disorder protein 1 protein.
Length = 1283
Score = 30.3 bits (65), Expect = 9.4
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 522 VPRPFSIFVDVAIHTNLQITSIAVREK 602
V R F++ VD AIH+ L SI+ REK
Sbjct: 780 VARDFTVLVDRAIHSRLSRQSISTREK 806
>AC007556-2|AAX88965.1| 3881|Homo sapiens unknown protein.
Length = 3881
Score = 30.3 bits (65), Expect = 9.4
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 602 NP-LRQSKTYHRVR*SSLVPNDYLDLCIHLCL 694
NP L Q + +H++R + VPN +C HLCL
Sbjct: 3538 NPWLTQVRIFHQLRYNKSVPNLCKQICSHLCL 3569
>AC000064-1|AAB46346.1| 541|Homo sapiens WUGSC:H_RG083M05.1
protein.
Length = 541
Score = 30.3 bits (65), Expect = 9.4
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 522 VPRPFSIFVDVAIHTNLQITSIAVREK 602
V R F++ VD AIH+ L SI+ REK
Sbjct: 86 VARDFTVLVDRAIHSRLSRQSISTREK 112
>AB052092-1|BAB59063.1| 1283|Homo sapiens Pex1pG843D protein.
Length = 1283
Score = 30.3 bits (65), Expect = 9.4
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 522 VPRPFSIFVDVAIHTNLQITSIAVREK 602
V R F++ VD AIH+ L SI+ REK
Sbjct: 780 VARDFTVLVDRAIHSRLSRQSISTREK 806
>AB052091-1|BAB59062.1| 1283|Homo sapiens Pex1pL664P protein.
Length = 1283
Score = 30.3 bits (65), Expect = 9.4
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 522 VPRPFSIFVDVAIHTNLQITSIAVREK 602
V R F++ VD AIH+ L SI+ REK
Sbjct: 780 VARDFTVLVDRAIHSRLSRQSISTREK 806
>AB052090-1|BAB59061.1| 1226|Homo sapiens Pex1p-634del690 protein.
Length = 1226
Score = 30.3 bits (65), Expect = 9.4
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 522 VPRPFSIFVDVAIHTNLQITSIAVREK 602
V R F++ VD AIH+ L SI+ REK
Sbjct: 723 VARDFTVLVDRAIHSRLSRQSISTREK 749
>AB008112-1|BAA85162.1| 1283|Homo sapiens PEX1 protein.
Length = 1283
Score = 30.3 bits (65), Expect = 9.4
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 522 VPRPFSIFVDVAIHTNLQITSIAVREK 602
V R F++ VD AIH+ L SI+ REK
Sbjct: 780 VARDFTVLVDRAIHSRLSRQSISTREK 806
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,566,868
Number of Sequences: 237096
Number of extensions: 3036537
Number of successful extensions: 6884
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6866
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10928473528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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