Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c09
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   1.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   1.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   2.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   8.3  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 386 GFYPFHRAYFSVPSQV*PL**FFYYQ*SMMLKLILIYH 499
           G Y F +  F  P    PL  F Y   +M+ K ILIYH
Sbjct: 638 GGYKFDKRSFGFPLDK-PLYDFNYEGPNMLFKDILIYH 674


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 386 GFYPFHRAYFSVPSQV*PL**FFYYQ*SMMLKLILIYH 499
           G Y F +  F  P    PL  F Y   +M+ K ILIYH
Sbjct: 638 GGYKFDKRSFGFPLDK-PLYDFNYEGPNMLFKDILIYH 674


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 199 DIPWDLAGDLLLVYL 243
           +I W+LAG LLLV++
Sbjct: 171 NIRWELAGTLLLVWI 185


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 211 PKECRIWIP 185
           PKE +IWIP
Sbjct: 391 PKEMKIWIP 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,907
Number of Sequences: 438
Number of extensions: 6136
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)