Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11c06
(363 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY113210-1|AAM29215.1| 872|Drosophila melanogaster AT06220p pro... 29 1.8
AE014296-2188|AAF49882.2| 271|Drosophila melanogaster CG17666-P... 29 1.8
AE014296-2187|AAN11857.1| 872|Drosophila melanogaster CG17666-P... 29 1.8
AE014297-583|AAF54045.3| 1114|Drosophila melanogaster CG14608-PA... 29 2.4
AF273708-1|AAL35411.1| 118|Drosophila melanogaster PFTAIRE-inte... 27 5.6
AE014297-475|AAF54113.3| 118|Drosophila melanogaster CG31483-PA... 27 5.6
BT021412-1|AAX33560.1| 620|Drosophila melanogaster LD06050p pro... 27 9.7
AY121642-1|AAM51969.1| 204|Drosophila melanogaster LD09625p pro... 27 9.7
AY069708-1|AAL39853.1| 620|Drosophila melanogaster LD48015p pro... 27 9.7
AY060979-1|AAL28527.1| 114|Drosophila melanogaster GM13088p pro... 27 9.7
AE014296-1553|AAN11978.2| 620|Drosophila melanogaster CG5026-PB... 27 9.7
AE014296-1552|AAF50343.2| 620|Drosophila melanogaster CG5026-PA... 27 9.7
>AY113210-1|AAM29215.1| 872|Drosophila melanogaster AT06220p
protein.
Length = 872
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 165 HCCCYCWNPCAKPACCSN 112
+CC YC +PC CCSN
Sbjct: 752 NCCNYCCSPCG--CCCSN 767
>AE014296-2188|AAF49882.2| 271|Drosophila melanogaster CG17666-PB,
isoform B protein.
Length = 271
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 165 HCCCYCWNPCAKPACCSN 112
+CC YC +PC CCSN
Sbjct: 151 NCCNYCCSPCG--CCCSN 166
>AE014296-2187|AAN11857.1| 872|Drosophila melanogaster CG17666-PA,
isoform A protein.
Length = 872
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 165 HCCCYCWNPCAKPACCSN 112
+CC YC +PC CCSN
Sbjct: 752 NCCNYCCSPCG--CCCSN 767
>AE014297-583|AAF54045.3| 1114|Drosophila melanogaster CG14608-PA
protein.
Length = 1114
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 260 RLSIILNRIPVIKFRKGGAS 201
RL+ NRIPV FR+GGA+
Sbjct: 1016 RLTTTTNRIPVTTFRRGGAA 1035
>AF273708-1|AAL35411.1| 118|Drosophila melanogaster
PFTAIRE-interacting factor 2 protein.
Length = 118
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 168 THCCCYCWNPCAKPACCS 115
T CC C PC P CCS
Sbjct: 94 TPCCSPCCGPCCSP-CCS 110
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 168 THCCCYCWNPCAKPACCS 115
T CC C PC P CCS
Sbjct: 82 TPCCTPCCTPCCTP-CCS 98
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 168 THCCCYCWNPCAKPACCS 115
T CC C +PC P CCS
Sbjct: 90 TPCCTPCCSPCCGP-CCS 106
Score = 26.6 bits (56), Expect = 9.7
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -1
Query: 168 THCCCYCWNPCAKPAC 121
T CC C PC P C
Sbjct: 86 TPCCTPCCTPCCSPCC 101
>AE014297-475|AAF54113.3| 118|Drosophila melanogaster CG31483-PA
protein.
Length = 118
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 168 THCCCYCWNPCAKPACCS 115
T CC C PC P CCS
Sbjct: 94 TPCCSPCCGPCCSP-CCS 110
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 168 THCCCYCWNPCAKPACCS 115
T CC C PC P CCS
Sbjct: 82 TPCCTPCCTPCCTP-CCS 98
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 168 THCCCYCWNPCAKPACCS 115
T CC C +PC P CCS
Sbjct: 90 TPCCTPCCSPCCGP-CCS 106
Score = 26.6 bits (56), Expect = 9.7
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -1
Query: 168 THCCCYCWNPCAKPAC 121
T CC C PC P C
Sbjct: 86 TPCCTPCCTPCCSPCC 101
>BT021412-1|AAX33560.1| 620|Drosophila melanogaster LD06050p
protein.
Length = 620
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = -1
Query: 147 WNPCAKPACCSNEYWCYTRHRPTSTLQETTTLRRRDCLYQ 28
W P + Y CYT ++ + T + DC+YQ
Sbjct: 434 WIQAGHPFASRHRYSCYTPNQTRNKTSGATFVLFLDCIYQ 473
>AY121642-1|AAM51969.1| 204|Drosophila melanogaster LD09625p
protein.
Length = 204
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = -1
Query: 147 WNPCAKPACCSNEYWCYTRHRPTSTLQETTTLRRRDCLYQ 28
W P + Y CYT ++ + T + DC+YQ
Sbjct: 18 WIQAGHPFASRHRYSCYTPNQTRNKTSGATFVLFLDCIYQ 57
>AY069708-1|AAL39853.1| 620|Drosophila melanogaster LD48015p
protein.
Length = 620
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = -1
Query: 147 WNPCAKPACCSNEYWCYTRHRPTSTLQETTTLRRRDCLYQ 28
W P + Y CYT ++ + T + DC+YQ
Sbjct: 434 WIQAGHPFASRHRYSCYTPNQTRNKTSGATFVLFLDCIYQ 473
>AY060979-1|AAL28527.1| 114|Drosophila melanogaster GM13088p
protein.
Length = 114
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -1
Query: 201 SCRYKLSRSFRTHCCCYCWNPCAKPACC--SNEYWC 100
+C +S++FR C C + C +CC SN+ C
Sbjct: 30 ACLLTVSQAFRLSSDCECSSRCVCCSCCCSSNDCGC 65
>AE014296-1553|AAN11978.2| 620|Drosophila melanogaster CG5026-PB,
isoform B protein.
Length = 620
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = -1
Query: 147 WNPCAKPACCSNEYWCYTRHRPTSTLQETTTLRRRDCLYQ 28
W P + Y CYT ++ + T + DC+YQ
Sbjct: 434 WIQAGHPFASRHRYSCYTPNQTRNKTSGATFVLFLDCIYQ 473
>AE014296-1552|AAF50343.2| 620|Drosophila melanogaster CG5026-PA,
isoform A protein.
Length = 620
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = -1
Query: 147 WNPCAKPACCSNEYWCYTRHRPTSTLQETTTLRRRDCLYQ 28
W P + Y CYT ++ + T + DC+YQ
Sbjct: 434 WIQAGHPFASRHRYSCYTPNQTRNKTSGATFVLFLDCIYQ 473
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,460,715
Number of Sequences: 53049
Number of extensions: 204845
Number of successful extensions: 712
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 922092336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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