Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c05
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    28   2.0  
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit...    27   4.6  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    27   4.6  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   4.6  

>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 330 IVVSGKMGLGSSSQKLKIIVYHFLFFIEK 244
           +V+SG+ G G S+Q ++ I+ H+L   EK
Sbjct: 596 VVISGETGSGKSTQVVQFILDHYLSSGEK 624


>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
           Tom40|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = -1

Query: 252 IEKHKLISNHHLSAKYLKINVWHCCHPWATVTTSLQIGHMII 127
           + K  L+SN+  +     +    C  PW TV+ +  +G  ++
Sbjct: 40  VSKDILLSNYAFTGVRADVTKGFCTSPWFTVSHAFALGSQVL 81


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 156 WSLSPMDDSNAIHLFLNIWHLNDDLKLI 239
           W L+P D SN I   LN  +LN+ + ++
Sbjct: 302 WILTPEDFSNQIEALLNTENLNEAISVL 329


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 258 FFIEKHKLISNHHLSAKYLKINVWHCCHPWATVTTSL 148
           +F   H L     L    L++  + CCHPW   ++SL
Sbjct: 536 YFNNDHDLSRYGFLLVSLLRLRQF-CCHPWLVKSSSL 571


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,256
Number of Sequences: 5004
Number of extensions: 63219
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)