Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c05
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0864 - 32319266-32319517,32320139-32320767,32321106-323211...    31   1.2  
11_06_0234 + 21574380-21575197,21576131-21576190,21578320-215800...    29   3.6  

>02_05_0864 -
           32319266-32319517,32320139-32320767,32321106-32321139,
           32321234-32321427,32322044-32322383
          Length = 482

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 516 VYTYHQPNIVDHIMCRWKGIFLTKSVTRYYCLAY 617
           VYT+ QP + D  +CR+    L   V+RY+   Y
Sbjct: 333 VYTFGQPRVGDEGLCRFMDGHLATPVSRYFRFVY 366


>11_06_0234 +
           21574380-21575197,21576131-21576190,21578320-21580053,
           21581859-21582006
          Length = 919

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
 Frame = -1

Query: 312 MGLGSSSQKLKIIVYHFLFFIEKHKL--ISNHHLSAKYLKINVWHC-----CHPWATVTT 154
           + +G     +K ++ H L  ++KHK   +    LS  YL   V        C PW TV  
Sbjct: 223 ISVGQKPADIKNVLKHILIGLDKHKYMELDTSQLSESYLTDEVREYLDNKRCGPWTTVPP 282

Query: 153 SL 148
           SL
Sbjct: 283 SL 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,596,907
Number of Sequences: 37544
Number of extensions: 333610
Number of successful extensions: 569
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)