Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c02
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   0.65 
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    26   1.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   2.6  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    25   3.5  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   4.6  
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni...    25   4.6  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    24   6.1  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    24   6.1  
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    24   8.0  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    24   8.0  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    24   8.0  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    24   8.0  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    24   8.0  

>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 27.5 bits (58), Expect = 0.65
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 234  QFLGTSQAGPIQRDTFHEACEE 169
            Q +  SQAGP  RDT H   +E
Sbjct: 1338 QLISGSQAGPFARDTIHALMDE 1359


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 243 ADKKMIGLNTDAQGQTEEHERFHCDR 320
           A+KK   LN +    TE+ E F C+R
Sbjct: 328 AEKKKALLNCECGDSTEDSEMFQCER 353


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 79   AVMFTVALLLSESNAWIPVIILLSAL 156
            AV+ +V  +LS +N W PVI  L  +
Sbjct: 2193 AVLLSVIKILSLNNVWFPVIFGLGLI 2218


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 179 RVKNYFYSSADNKIITGIQALDSLNSKATVN 87
           R  +Y  S++ NK++ G    D+L   AT+N
Sbjct: 119 RHHDYTNSNSSNKLVFGTPLEDALRRDATIN 149


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 158 SSADNKIITGIQALDSLNSKATVNITAGGVGYPY 57
           S A +K+ +        NS ATV++ A G  +PY
Sbjct: 309 SFAHSKLPSSANPNTPFNSTATVDVGAAGSHFPY 342


>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
           Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 222 YQGTGYIADKKMIGLNTDAQGQTEEHERFHCDRRRALSEEI 344
           Y+G GY   +++IG  ++  G+ E+      D R+ LS ++
Sbjct: 123 YKGLGYSVYRRVIGYYSNPHGKDED----SFDMRKPLSRDV 159


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 176 VKNYFYSSADNKIITGIQALDSLNSKATVNITAGGVGYP 60
           + N   +SA N +     ALD+   +    +T GG  YP
Sbjct: 71  IDNARKASATNPLFPLAIALDTKGPEIRTGLTVGGTDYP 109


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -1

Query: 227 LVHHKLVQYNAIPFMKRVKNYFYSSADNKIITGIQALDSLNSKATVNITAG 75
           L H    + NAI  +       Y  +D  +IT +   + LN  + VN + G
Sbjct: 621 LKHFDSKEKNAIFALGEKPQLMYYESDKLVITPLSCTEMLNISSYVNPSLG 671


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 102 TVERVQRLDTCNNFIIGTAVEVVLHTLHERYRVVLDQLVM 221
           ++ RVQ L+T  +F+  +  E+     +E+Y  VLD   M
Sbjct: 108 SLARVQTLETTGSFLNSSNSEIRETIKNEKYFRVLDAFKM 147


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 146 NKIITGIQALDSLNSKATVNITAGGVGYPYVNMRM-KSERGSGLSYD 9
           ++++  + A  SL +   ++     +GY Y+ +RM ++    G++YD
Sbjct: 701 DRLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVYGIAYD 747


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 228 GTGYIADKKMIGLNTDAQGQTEEHERFHCDR 320
           G+GY  + +++G  T + G   E+E  H  R
Sbjct: 20  GSGYSTEIQIVGTVTSSDGSYVEYEIVHQKR 50


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = -3

Query: 348 LEFPPKAHV----FYRNEISRAPLSVLVRLCSILSF 253
           + + PK +     F RN   RAPL VLV  C + +F
Sbjct: 153 INYSPKTYTKIFDFLRN--GRAPLQVLVHHCMLYNF 186


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -1

Query: 221 HHKLVQYNAIPFMKRVKNYFYSSADNKIITGIQALDSLNSKATVNITAGGVGYPYVNMR 45
           H     +NA     ++ + F  +  +  I GI   D+L   A ++ TAGG+G    N+R
Sbjct: 200 HASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIY--DTLKMCAMISKTAGGIGINIHNIR 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,451,832
Number of Sequences: 5004
Number of extensions: 26462
Number of successful extensions: 95
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)