Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11c02
(356 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344... 30 0.47
07_01_0843 - 6851354-6851518,6851654-6852448 27 3.3
01_01_0885 + 6966700-6966979,6967930-6968110,6968224-6968365,696... 27 3.3
06_01_0024 + 233101-233189,233259-233340,233430-233493,233636-23... 27 4.3
09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627... 27 5.7
02_02_0571 - 11664292-11664809,11664900-11665750,11665837-11666468 27 5.7
11_01_0395 + 2999855-2999920,3000605-3002191 26 7.6
03_05_0741 + 27287414-27287479,27287887-27287946,27288949-272891... 26 7.6
01_01_1102 - 8734984-8736090,8736430-8736557,8736671-8736708,873... 26 7.6
>02_05_0889 -
32532495-32533832,32533919-32534151,32534321-32534461,
32534564-32535521
Length = 889
Score = 30.3 bits (65), Expect = 0.47
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +3
Query: 153 TAVEVVLHTLHERYRVVLDQLVMYQGTGYI------ADKKMIGLNTDAQGQTEEHERFHC 314
T EV HT E +++ V Y TG++ AD MI TD TEE + H
Sbjct: 517 TMSEVRRHTTPESAWIIVHGHV-YDCTGFLKDHPGGADSIMINAGTDC---TEEFDAIHS 572
Query: 315 DRRRALSEEIRV 350
D+ R L E R+
Sbjct: 573 DKARGLLEMYRI 584
>07_01_0843 - 6851354-6851518,6851654-6852448
Length = 319
Score = 27.5 bits (58), Expect = 3.3
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 173 KNYFYSSADNKIITGIQALDSLNSKATVNITAGGVGYPYVNMRMKSERGSGLSY 12
KNY + D KI+ G + L + T+ +AGGV N+ +E+ L Y
Sbjct: 17 KNYLTWALDAKIMLGAKKLLNCIQDPTIATSAGGVN----NLPTSAEKNQALHY 66
>01_01_0885 +
6966700-6966979,6967930-6968110,6968224-6968365,
6968448-6968517,6968617-6968783
Length = 279
Score = 27.5 bits (58), Expect = 3.3
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 123 LDTCNNFI-IGTAVEVVLHTLHERYRVVLDQLVMYQGTGYIADKK 254
L +C NF+ + V VVLHT+ Y DQ+ Y G++ KK
Sbjct: 212 LGSCCNFLTLVYIVFVVLHTVPILYEKYEDQIDSYGEKGWVEIKK 256
>06_01_0024 +
233101-233189,233259-233340,233430-233493,233636-233826,
233901-233978,234133-234207,234436-234506,234710-234826,
234915-235016,235196-235316,235451-235537,235708-235794,
236237-236338,236629-236692,237554-237580,237581-237636,
238185-238256,238540-238622,238953-239001,239335-239397,
239633-239722,239823-239909,240072-240146,240222-240280,
240511-240604,240681-240899,240998-241092,241504-241594,
241663-241767,241847-241885,242263-242352,242538-242639,
242837-242918,243075-243160,243264-243362
Length = 1030
Score = 27.1 bits (57), Expect = 4.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 304 LSCSSVCPCASVFNPIIFLSAIYPVPWYI 218
+ CS+ A NP+ FL + P PW +
Sbjct: 1 MQCSNTEVGAGTMNPLTFLRVLGPEPWNV 29
>09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,
6272359-6272511,6273381-6273586,6274280-6274733,
6276573-6276610,6276923-6277046,6277184-6277246,
6277350-6277412,6277526-6278152,6278267-6278294,
6278373-6278413,6278689-6278851,6278987-6279039,
6279217-6279262,6279373-6279444,6279578-6279741,
6279968-6280099,6280249-6280565,6280721-6280892,
6281009-6281107,6281275-6281349,6281446-6281504,
6281647-6281836,6281982-6282020
Length = 1255
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = -1
Query: 245 GDISSSLVHH--KLVQYNAIPFMKRVKNYFYSSADNKIITGIQALDSLNSK 99
GD+S+ ++ +L+ +N P K KNYF+SS +++ I+ ++ + K
Sbjct: 1069 GDVSNYVISAFCRLMFHNNHP-SKSKKNYFFSSIGYQLLKKIECIEMVKIK 1118
>02_02_0571 - 11664292-11664809,11664900-11665750,11665837-11666468
Length = 666
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 276 RLCSILSFSCRRYIQFLGTSQAGPIQRDT 190
R+C I S C R++ G + +GP Q T
Sbjct: 97 RICFIASLDCARFLLMQGMAFSGPGQSPT 125
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 100 LLLSESNAWIPVIILLSALL*K*FFTRFMKGIALYWTS 213
LLLS AW+ + IL+SA+ + +RF+ + Y+++
Sbjct: 49 LLLSPDRAWLGMEILISAVAGE-LISRFISSLQQYYSN 85
>03_05_0741 + 27287414-27287479,27287887-27287946,27288949-27289112,
27289158-27289241,27290115-27290178,27291181-27291334,
27291605-27291675,27292138-27292242,27292734-27292826,
27293672-27293746,27294114-27294199,27294293-27294499,
27294585-27294684,27294765-27294835,27294960-27295041,
27295920-27296078,27296480-27296533,27296775-27296817,
27297630-27297712,27298569-27298631,27298720-27298794,
27299620-27299745,27300267-27300499,27300611-27300655,
27300953-27301019,27302095-27302166,27302276-27302520,
27302598-27302655,27302743-27302910,27303224-27303298,
27303412-27303669
Length = 1101
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 48 HIHVRIADTARSNVHGRLTVERVQRLDTC 134
H+ R+ T+ S++H + V R LD C
Sbjct: 926 HVRTRLYFTSESHIHSLMNVLRYCNLDEC 954
>01_01_1102 -
8734984-8736090,8736430-8736557,8736671-8736708,
8736815-8737030,8737252-8737413,8738381-8738559,
8738693-8738799,8738918-8739082,8739201-8739284,
8739364-8739559
Length = 793
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 252 KMIGLNTDAQGQTEEHERFHCDRRRALSEEI 344
K N + +G EH +H RR+L EE+
Sbjct: 730 KEFSSNNEVKGHKNEHPVYHGRPRRSLQEEL 760
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,752,689
Number of Sequences: 37544
Number of extensions: 180880
Number of successful extensions: 437
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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