Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11c02
(356 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z95619-3|CAB54269.1| 490|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z95619-2|CAB09114.1| 450|Caenorhabditis elegans Hypothetical pr... 27 3.9
AL132876-26|CAC48128.1| 922|Caenorhabditis elegans Hypothetical... 27 3.9
AL132876-25|CAH04764.1| 930|Caenorhabditis elegans Hypothetical... 27 3.9
AL132876-9|CAD21661.1| 959|Caenorhabditis elegans Hypothetical ... 27 3.9
Z92784-3|CAB07194.1| 318|Caenorhabditis elegans Hypothetical pr... 27 5.1
AF038619-4|AAB92074.1| 340|Caenorhabditis elegans Hypothetical ... 26 6.7
Z81124-12|CAI46579.2| 489|Caenorhabditis elegans Hypothetical p... 26 8.9
U80447-10|AAB37814.1| 477|Caenorhabditis elegans Hypothetical p... 26 8.9
>Z95619-3|CAB54269.1| 490|Caenorhabditis elegans Hypothetical
protein H21P03.3b protein.
Length = 490
Score = 27.1 bits (57), Expect = 3.9
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 9 VVTQAGSTFTLHAHIHVRIADTAR-SNVHGRLTVERVQRLDTCNNFIIGTAVEVVLHTLH 185
VV AG+T TL + IH R T ++ L + L C N +IG+ V +++ L
Sbjct: 193 VVAAAGNTITL-SWIHERYPLTPPLPDIVFELIPKIPWGLRLCENLMIGSFVSLLVLILF 251
Query: 186 ERYR-VVLDQL 215
R+R +VL +L
Sbjct: 252 HRHRWIVLRRL 262
>Z95619-2|CAB09114.1| 450|Caenorhabditis elegans Hypothetical
protein H21P03.3a protein.
Length = 450
Score = 27.1 bits (57), Expect = 3.9
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 9 VVTQAGSTFTLHAHIHVRIADTAR-SNVHGRLTVERVQRLDTCNNFIIGTAVEVVLHTLH 185
VV AG+T TL + IH R T ++ L + L C N +IG+ V +++ L
Sbjct: 153 VVAAAGNTITL-SWIHERYPLTPPLPDIVFELIPKIPWGLRLCENLMIGSFVSLLVLILF 211
Query: 186 ERYR-VVLDQL 215
R+R +VL +L
Sbjct: 212 HRHRWIVLRRL 222
>AL132876-26|CAC48128.1| 922|Caenorhabditis elegans Hypothetical
protein Y105E8A.10c protein.
Length = 922
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -1
Query: 203 YNAIPFMKRVKNYFYSSADNKIITGIQALDSLNSKATVNITAGGVG 66
Y A+PF++R Y+ +K I L K + GG+G
Sbjct: 61 YEALPFVRRYFMYWMKHTFDKEKLFINTFQPLKHKPYYGVPCGGIG 106
>AL132876-25|CAH04764.1| 930|Caenorhabditis elegans Hypothetical
protein Y105E8A.10b protein.
Length = 930
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -1
Query: 203 YNAIPFMKRVKNYFYSSADNKIITGIQALDSLNSKATVNITAGGVG 66
Y A+PF++R Y+ +K I L K + GG+G
Sbjct: 69 YEALPFVRRYFMYWMKHTFDKEKLFINTFQPLKHKPYYGVPCGGIG 114
>AL132876-9|CAD21661.1| 959|Caenorhabditis elegans Hypothetical
protein Y105E8A.10a protein.
Length = 959
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -1
Query: 203 YNAIPFMKRVKNYFYSSADNKIITGIQALDSLNSKATVNITAGGVG 66
Y A+PF++R Y+ +K I L K + GG+G
Sbjct: 98 YEALPFVRRYFMYWMKHTFDKEKLFINTFQPLKHKPYYGVPCGGIG 143
>Z92784-3|CAB07194.1| 318|Caenorhabditis elegans Hypothetical
protein F31C3.4 protein.
Length = 318
Score = 26.6 bits (56), Expect = 5.1
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 105 VERVQRLDTCNNFIIGTAVEVVLHTLHE-RYRVVLDQLVMYQG 230
V + + C F+ T EV+ H LH +YR +L +Y G
Sbjct: 262 VSSILQAIACGTFLYITTFEVIPHELHNGKYR-ILKMFFIYMG 303
>AF038619-4|AAB92074.1| 340|Caenorhabditis elegans Hypothetical
protein F56A11.5 protein.
Length = 340
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 200 NAIPFMKRVKNYFYSSADNKIITGIQALDSLNSKATVNITA 78
N +P KR+ + Y+ +IT +LD LNSK N+++
Sbjct: 194 NEVP--KRIDDTAYADLAPYMITSQASLDDLNSKLDQNVSS 232
>Z81124-12|CAI46579.2| 489|Caenorhabditis elegans Hypothetical
protein T21B4.17 protein.
Length = 489
Score = 25.8 bits (54), Expect = 8.9
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = +1
Query: 277 HKDRQRSTRDFIAIEDVRFRRKFE 348
HKD +++ ++++A + ++ R KFE
Sbjct: 187 HKDAEKNEQEYLAQKKIKDREKFE 210
>U80447-10|AAB37814.1| 477|Caenorhabditis elegans Hypothetical
protein F55F8.9 protein.
Length = 477
Score = 25.8 bits (54), Expect = 8.9
Identities = 24/78 (30%), Positives = 35/78 (44%)
Frame = +3
Query: 9 VVTQAGSTFTLHAHIHVRIADTARSNVHGRLTVERVQRLDTCNNFIIGTAVEVVLHTLHE 188
+ T A T L A I + + A + + LT+ +Q L FI T EV+LH
Sbjct: 369 IFTLASMT-PLGALIGLAVTSAADNALWKDLTITILQGL-AVGTFIYVTFFEVLLHERDN 426
Query: 189 RYRVVLDQLVMYQGTGYI 242
+ +L LVM+ G I
Sbjct: 427 EHPNLLKLLVMFIGFALI 444
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,147,188
Number of Sequences: 27780
Number of extensions: 150335
Number of successful extensions: 418
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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