Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11c02
         (356 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.62 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   2.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   3.3  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    20   7.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   7.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 0.62
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +3

Query: 75  ARSNVHG-RLTVERVQRLDTCNNFII 149
           ARS + G R+T E+++R D  +N+I+
Sbjct: 707 ARSLMEGPRMTAEQLKRTDIIHNYIM 732


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 20/61 (32%), Positives = 25/61 (40%)
 Frame = -1

Query: 233 SSLVHHKLVQYNAIPFMKRVKNYFYSSADNKIITGIQALDSLNSKATVNITAGGVGYPYV 54
           S L  H L   N  PFMK    Y     +N    GIQ + +  S A V    G + +  V
Sbjct: 269 SPLTSHSLYYVNMEPFMK--SQY---EENNIEYEGIQDIFNTQSSAKVMSKNGVLFFGLV 323

Query: 53  N 51
           N
Sbjct: 324 N 324


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 186 ERYRVVLDQLVMYQGTGYIADKKMIGL 266
           ER + V  QL  Y+G G     + +GL
Sbjct: 499 ERMKQVYQQLNKYRGNGVSLKGETVGL 525


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
          protein.
          Length = 69

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 84 YCGRCRLSVREYAH 43
          YC   +L +R+Y+H
Sbjct: 56 YCHSLKLHLRKYSH 69


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 312 NEISRAPLSVLVRLCSILSFSCRRYI 235
           +EIS +  S    LC   + +CRRY+
Sbjct: 657 SEISESYSSNNKTLCKCDAQNCRRYL 682


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,149
Number of Sequences: 438
Number of extensions: 2250
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)